Hi Jason and everyone,
Thanks for your suggestion. But the problem seem still to happen again. When I enter the command:"./patch_amber.py --update"
-----------------------------------------------------------------------------------------------------------------------------
javacfish.linux-th8x:~/soft/amber12> ./patch_amber.py --update
Determining patches to download for AmberTools12
AmberTools12 is up to date. Nothing to download
Determining patches to download for Amber12
Amber12 is up to date. Nothing to download
-----------------------------------------------------------------------------------------------------------------------------
I make sure all update completely. However, I run ./configure gnu, and then knock the command:"make install", the err happens as below:
********************************************************************************************
vrank3-transpose.c:(.text+0x1246): undefined reference to `__intel_ssse3_memcpy'
/home/bai/soft/amber12/lib/libfftw3.a(vrank3-transpose.o):vrank3-transpose.c:(.text+0x1261): more undefined references to `__intel_ssse3_memcpy' follow
/home/bai/soft/amber12/lib/libfftw3.a(trig.o): In function `cexpl_sincos':
trig.c:(.text+0x189): undefined reference to `__libm_sse2_sincos'
/home/bai/soft/amber12/lib/libfftw3.a(trig.o): In function `fftw_mktriggen':
trig.c:(.text+0x41e): undefined reference to `__libm_sse2_sincos'
trig.c:(.text+0x52e): undefined reference to `__libm_sse2_sincos'
collect2: error: ld returned 1 exit status
make[2]: *** [pbsa] Error 1
make[2]: Leaving directory `/home/bai/soft/amber12/AmberTools/src/pbsa'
make[1]: *** [serial] Error 2
make[1]: Leaving directory `/home/bai/soft/amber12/AmberTools/src'
make: *** [install] Error 2
********************************************************************************************
Could you give me more advice?
Thanks
Javacfish
________________________________
From: Jason Swails <jason.swails.gmail.com>
To: javacfish <javacfish.yahoo.com.cn>; AMBER Mailing List <amber.ambermd.org>
Sent: Thursday, March 14, 2013 5:19 AM
Subject: Re: [AMBER] The err Install of Amber12 and AmberTools on opensuse 12.3
This was fixed some time ago. Update your system first and then try again. You can update Amber by doing:
cd $AMBERHOME
./patch_amber.py --update
Keep running ./patch_amber.py --update until it tells you that there are no updates to apply. Then re-run configure and build Amber.
HTH,
Jason
On Wed, Mar 13, 2013 at 1:54 PM, javacfish <javacfish.yahoo.com.cn> wrote:
Hello everyone,
>
>when I install Amber12 on the Opensuse linux (gcc version 4.7.1 20120723), I used ./configure gnu. But when I run make install, the err happen as below:
>
>--------------------------------------------------------------------------------------------------------------------------------------------------------------
>a - mkl_fft.o
>ranlib /home/bai/soft/amber12/lib/librism.a
>gfortran -c -DBINTRAJ \
> \
> -O3 -mtune=native -ffree-form -I/home/bai/soft/amber12/include -I/home/bai/soft/amber12/include \
> -o rism1d.o rism1d.F90
>rism1d.F90:1262.8:
>
> use rism1d_m
> 1
>Error: 'rism1d' of module 'rism1d_m', imported at (1), is also the name of the current program unit
>rism1d.F90:1262.8:
>
> use rism1d_m
> 1
>Error: Name 'rism1d' at (1) is an ambiguous reference to 'rism1d' from current program unit
>rism1d.F90:1261.16:
>
> program rism1d
> 1
>Error: Name 'rism1d' at (1) is an ambiguous reference to 'rism1d' from current program unit
>make[2]: *** [rism1d.o] Error 1
>make[2]: Leaving directory `/home/bai/soft/amber12/AmberTools/src/rism'
>make[1]: *** [serial] Error 2
>make[1]: Leaving directory `/home/bai/soft/amber12/AmberTools/src'
>make: *** [install] Error 2
>
>--------------------------------------------------------------------------------------------------------------------------------------------------------------
>
>
>Could someone help me? Give me some suggestion?
>
>Thanks
>
>javacfish
>_______________________________________________
>AMBER mailing list
>AMBER.ambermd.org
>http://lists.ambermd.org/mailman/listinfo/amber
>
--
Jason M. Swails
Quantum Theory Project,
University of Florida
Ph.D. Candidate
352-392-4032
_______________________________________________
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Received on Thu Mar 14 2013 - 09:00:05 PDT
