Re: [AMBER] Annomalous "TER" is inserted in a peptide including non-standard AA

From: David A Case <case.biomaps.rutgers.edu>
Date: Tue, 5 Mar 2013 10:55:58 -0500

On Tue, Mar 05, 2013, kurisaki wrote:
>
> Using "desc" command,
> I found that connection0/1 was not properly set,
> Exactly, when I used PREP file.
>
> Such a connection was not set at all
> When I used MOL2 files.

But you also said that you "set the head and tail for these residues". Can
you say exactly what you did, and in what order, e.g. give the exact commands
you used in LEaP? It looks like there may be a bug, either in the
documentation or in the code, and we should try to fix it. This is much
easier if you can provide a small example that illustrates the problem.

...thanks...dac


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Received on Tue Mar 05 2013 - 08:00:03 PST
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