Re: [AMBER] amber12 configure error

From: Jason Swails <jason.swails.gmail.com>
Date: Fri, 1 Mar 2013 09:15:58 -0500

Your compilers are busted. This basically means that your compilers can't
compile "hello world" http://en.wikipedia.org/wiki/Hello_world_program.
 Unfortunately there's not much remote help this list will likely be able
to provide.

Good luck,
Jason

On Fri, Mar 1, 2013 at 3:09 AM, Asmita Gupta <asmita4des.gmail.com> wrote:

> Dear Users,
>
> I am trying to install Amber12 on a CentOS system (v5.9, final).
>
> While trying to configure it using ./configure -nofftw3 gnu, i am getting
> the following error :
>
> ====================
> Searching for python2... Found python2.4: /usr/bin/python2.4
>
> Obtaining the gnu suite version:
> gcc -v
> The version is 4.1.2
>
> Testing the gcc compiler:
> gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -o testp testp.c
> OK
>
> Testing the gfortran compiler:
> gfortran -O0 -o testp testp.f
> /usr/libexec/gcc/x86_64-redhat-linux/4.1.2/f951: symbol lookup error:
> /usr/libexec/gcc/x86_64-redhat-linux/4.1.2/f951: undefined symbol:
> __gmpn_sqr_n
> ./configure2: line 1581: ./testp: No such file or directory
> Error: Unable to compile a Fortran program using gfortran -O0
> Please check your compiler settings and configure flags.
> Configure failed due to the errors above!
> =========================
>
> I checked for the consistency in the versions of gcc, g++ and gfortran
> compilers. All have version 4.1.2 installed.
> Is it a compiler issue?
>
> Thanks
>
> Asmi
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> http://lists.ambermd.org/mailman/listinfo/amber
>



-- 
Jason M. Swails
Quantum Theory Project,
University of Florida
Ph.D. Candidate
352-392-4032
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Received on Fri Mar 01 2013 - 06:30:02 PST
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