Hi All,
I am working on some polymeric system and want to introduce naphthalene like ring system in polymer at intervals. I am using sequence command to add ring residues to the polymer. As polymer is a complex system so when I add a ring residues at intervals of polymer using sequence command few rings are added in such a manner that some polymer fragments criss cross the ring. Its not a good idea to somehow relax the rings using xleap one by one as there are many ring systems.
Please suggest.
regards,
Jiomm
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Tue Feb 26 2013 - 07:00:03 PST