Hi,
We Have tried to install amber11 on a unit of three servers; master : 8
core, node1 : 40 core and node2 : 40 core. /opt/ is the nfs mounted one.
amber installed on /opt/amber11 folder. with gnu compilers gfort gcc g++
and openmpi. After completing parallel installation of amber, sander can be
run in parallel from each one (master, node1 and node2 seperately) but not
altogether. Some shared library cannot be opened error with libmpi.s0.3 is
shown. Does anyone know what may be the reason. each node can be run
individually but not together. why. There is no problem of connection
between the nodes since simple parallel c programs can be run over all the
nodes in parallel (over the 88 cores available altogether).
Thanking you
Mary varughese
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Received on Mon Feb 25 2013 - 10:30:02 PST
