On Feb 25, 2013, at 1:17 AM, javier alejandro rendon carrillo <biotecnologo.rendon.gmail.com> wrote:
> Hi David!
>
> My name is Alex, i write to you because i cannot install amber12 in
> parallel on mac OS 10.8 Lion,
> so i follow the instructions in the web page
> http://jswails.wikidot.com/installing-amber12-and-ambertools-12
> and also add the next line to the amber pack, that was posted in the forum:
>
> *in $AMBERHOME/AmberTools/src/leap/src/leap, somewhere after the first
> line: *
> *> *
> *> .c.o: *
> *> $(CC) -c -I$(XHOME)/include $(CFLAGS) $(AMBERCFLAGS) -o $. $<** *
>
> after this i follow all the instructions:
>
> cd amber12
> export AMBERHOME=`pwd`
> ./patch_amber.py --update-tree
>
> ./configure -mpi gnu
>
> make install
>
> and this was the output from terminal at the end of the process:
>
> Installation of AmberTools12 MPI is complete at Fri Feb 22 01:32:03 CST
> 2013.
>
> ==============================================================
> /Users/javieralejandrorendoncarrillo/amber12/src/Makefile not found, or
> -noamber was set.
> This is expected if you have not installed Amber12.
> ==============================================================
Do you have a (purchased) copy of Amber 12? If not, this is expected (as the message points out).
HTH,
Jason
--
Jason M. Swails
Quantum Theory Project
University of Florida
Ph.D. Candidate
352-392-4032
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Received on Mon Feb 25 2013 - 03:30:02 PST
