[AMBER] phosporylated residue connectivity problem

From: BALA SUBRAMANI G L <glbala87.imtech.res.in>
Date: Tue, 5 Feb 2013 14:45:14 +0530 (IST)

Hai friends,
     Has anyone had trouble with fitting the main chain for phosphorylated
residues in coot & pymol? After i do real space Refine Zone over the
phosphorylated residue the main-chain of the phosphylated-residue is not
connected to the adjacent residues. Because of this problem, i couldn't
able to run MD simulations. can anyone suggest how to connect
phosphylated-residue with adjacent residues. Is there some trick to
getting the main-chain connected?

-- 
Thanks & Regards,
G.L.Balasubramani
(Project Assistant),
c/o.Dr.S.Kumaran,
Structural & Quatitative Biology Lab, GNRPC,
Institute of Microbial Technology (CSIR),
Sector 39-A, Chandigarh, India-160036.
ph : +91-9041280408/8284860166
off : 0172-6665475
______________________________________________________________________
सूक्ष्मजीव प्रौद्योगिकी संस्थान (वैज्ञानिक औद्योगिक अनुसंधान परिषद)
Institute of Microbial Technology (A CONSTITUENT ESTABLISHMENT OF CSIR)
सैक्टर 39 ए, चण्डीगढ़ / Sector 39-A, Chandigarh
पिन कोड/PIN CODE :160036
दूरभाष/EPABX :0172 6665 201-202
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Received on Tue Feb 05 2013 - 01:30:03 PST