#!/bin/bash
tar -jxf AmberTools12.tar.bz2
tar -jxf Amber12.tar.bz2
source "INTEL COMPILARVARS pATH"
export LD_LIBRARY_PATH="MPI LIBRARY":$LD_LIBRARY_PATH
export PATH="MPIPATH/bin/":$PATH
export AMBERHOME='/home/user/amber12'
cd $AMBERHOME
export http_proxy="http://"yourproxy".ernet.in:3128"
$AMBERHOME/patch_amber.py --update-tree
$AMBERHOME/patch_amber.py --update-tree
cd $AMBERHOME
./configure intel
make install
cd $AMBERHOME
./configure -mpi intel
make install
cd $AMBERHOME
./configure -cuda intel
make install
cd $AMBERHOME
./configure -cuda -mpi intel
make install