Hi Jeremy,
How are you analyzing your system? Which visualization software are you
using? Please state clearly.
Kshatresh
On Fri, Dec 28, 2012 at 11:58 PM, Jeremy AHHH <guitarchemistry.yahoo.com>wrote:
> I am relatively new with computational methods, so any help is
> appreciated. When i try to open up a prmtop file and an mdcrd file to
> analyze a MD simulation in water (after I have aligned the mdcrd file), the
> image looks very distorted, like most of the bond lengths are unreasonable.
> I loaded the mdcrd file with a periodic box. I've included a picture.
> What causes this and how can it be fixed?
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Received on Fri Dec 28 2012 - 11:30:03 PST
