Re: [AMBER] N-Methylacetamide-molecule-force field

From: David A Case <case.biomaps.rutgers.edu>
Date: Wed, 26 Dec 2012 08:42:59 -0500

On Wed, Dec 26, 2012, Subrata Paul wrote:
>
> How can we used NMA (*N*-*Methylacetamide) *molecule in AMBER force filed?

NMA = sequence { ACE NME }

(in LEaP). We generally recommend ff12SB for proteins (and protein-like
fragments), although for NMA, I don't think much would have changed since the
original Cornell et al. force field.

...dac


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Received on Wed Dec 26 2012 - 06:00:04 PST
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