Re: [AMBER] sander.MPI

From: Fabian Glaser <fglaser.technion.ac.il>
Date: Wed, 19 Dec 2012 15:10:54 +0200

>
>
> On Dec 18, 2012, at 4:20 AM, Fabian Glaser <fglaser.technion.ac.il> wrote:
>
>> Hi Jason,
>>
>> The system people asked me to ask you about the error produced when using more than one node. Here is the error:
>>
>> HYDU_create_process (./utils/launch/launch.c:94): execvp error on file 3SO6_clean_prod_3.rst (No such file or directory)
>>
>> So that is one of the nodes does not find the output file?
>
> Yes, that means that the master process (so the first line of $PBS_NODEFILE) is executing on a node that does not have access to that file. Check that it exists (make sure you cd to the correct directory in your submission script. A common first command in such a script is "cd $PBS_O_WORKDIR". This will move to the directory you submitted the job from.)
>

This is not the problems, I am using the right names without them the job dies immediately.

Fabian



> HTH,
> Jason
>
> --
> Jason M. Swails
> Quantum Theory Project
> University of Florida
> Ph.D. Candidate
> 352-392-4032
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Received on Wed Dec 19 2012 - 05:30:03 PST
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