[AMBER] solvent accessible volume vs

From: Nihal Korkmaz <enihalkorkmaz.gmail.com>
Date: Sun, 09 Dec 2012 22:08:14 -0600

Dear all,

How can I get the solvent accessible volume around my protein (or a
specific part/residue)? I am trying to get g(r) around a non spherical
surface via this command in ptraj

radial 10c1Na 0.05 16 :Cl- :33 closest

However I need the /volume vs radius/ data to be able to obtain the
actual g(r). Any suggestions will be greatly appreciated.

Thanks,
Nihal 

-- 
Nihal Korkmaz
Research & Teaching Assistant
UW-Madison, Biophysics Program
Member of Qiang Cui Lab
1101 University Ave, Rm. 8359
Madison, WI 53706
Phone: 608-265-3644,
Email: korkmaz.wisc.edu
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Received on Sun Dec 09 2012 - 20:30:02 PST
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