Re: [AMBER] Fatal Error: File 'netcdf.mod' opened at (1) is not a GFORTRAN module file

From: Jason Swails <jason.swails.gmail.com>
Date: Wed, 5 Dec 2012 19:30:57 -0500

On Dec 5, 2012, at 6:18 PM, Thomas Evangelidis <tevang3.gmail.com> wrote:

> I am using CUDA 4.2 but changed the /usr/local/cuda/include/host_config.h
> to not complain with my gcc compiler version. I have posted an older
> message about intel compilers failing to install pmemd.cuda, and Ross
> recommended the GNU compilers as they are more stable with CUDA.

My guess is there is a reason that NVIDIA disabled nvcc with newer GCC versions, and the errors you are seeing are a result of that incompatibility.

If you do not have an older GCC version to use, I suggest that you go back to the intel compilers. The biggest thing to worry about with those compilers is to make sure that you set up your environment correctly with them. Intel provides sourceable scripts for both bash and csh to do this for you.

Good luck.

Jason

--
Jason M. Swails
Quantum Theory Project,
University of Florida
Ph.D. Candidate
352-392-4032
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Received on Wed Dec 05 2012 - 17:00:03 PST
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