checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether to enable maintainer-specific portions of Makefiles... no checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking for style of include used by make... GNU checking dependency style of g++... gcc3 checking for gcc... gcc checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking dependency style of gcc... gcc3 checking for swig... /usr/bin/swig checking for python... /usr/bin/python checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for mt... mt checking if mt is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... no checking whether to build static libraries... yes checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking Boost version... 1-38 Cannot find log4cxx checking for X... libraries , headers checking QTDIR... configure: WARNING: QTDIR is not defined Using TinyXML provided with MTK++ checking for doxygen... yes checking for latex... yes checking for dvips... yes checking for gs... yes checking for dot... no checking for diff... yes checking for gcc option to accept ISO C99... unsupported checking for gcc option to accept ISO C89... (cached) none needed checking for gcc option to accept ISO Standard C... (cached) none needed checking whether we are using the GNU C++ compiler... (cached) yes checking whether g++ accepts -g... (cached) yes checking dependency style of g++... (cached) gcc3 checking whether we are using the GNU C compiler... (cached) yes checking whether gcc accepts -g... (cached) yes checking for gcc option to accept ISO C89... (cached) none needed checking dependency style of gcc... (cached) gcc3 checking for ANSI C header files... (cached) yes checking whether stat file-mode macros are broken... no checking whether time.h and sys/time.h may both be included... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking for stdlib.h... (cached) yes checking algorithm usability... yes checking algorithm presence... yes checking for algorithm... yes checking cassert usability... yes checking cassert presence... yes checking for cassert... yes checking cmath usability... yes checking cmath presence... yes checking for cmath... yes checking complex usability... yes checking complex presence... yes checking for complex... yes checking cstring usability... yes checking cstring presence... yes checking for cstring... yes checking deque usability... yes checking deque presence... yes checking for deque... yes checking fstream usability... yes checking fstream presence... yes checking for fstream... yes checking limits usability... yes checking limits presence... yes checking for limits... yes checking list usability... yes checking list presence... yes checking for list... yes checking queue usability... yes checking queue presence... yes checking for queue... yes checking for string... yes checking for zlib.h... yes checking if zlib should be used... yes checking for stdbool.h that conforms to C99... yes checking for _Bool... no checking for an ANSI C-conforming const... yes checking for inline... inline checking for working strtod... yes checking for pow... yes checking for sqrt... yes configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating src/Log/Makefile config.status: creating src/tinyxml/Makefile config.status: creating src/Diagnostics/Makefile config.status: creating src/Statistics/Makefile config.status: creating src/Molecule/Makefile config.status: creating src/Parsers/Makefile config.status: creating src/MM/Makefile config.status: creating src/GA/Makefile config.status: creating src/Minimizers/Makefile config.status: creating src/Graph/Makefile config.status: creating src/Utils/Makefile config.status: creating tests/Makefile config.status: creating tools/Makefile config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands ------------------------------------------------------------------------------ MTKpp-0.2.0 package configuration: ------------------------------------------------------------------------------ Directories: - prefix ....... : /home/jiaxu/amber12 - docdir ....... : /home/jiaxu/amber12/doc - exec_prefix .. : ${prefix} - includedir ... : /home/jiaxu/amber12/include/mtkpp - libdir ....... : ${exec_prefix}/lib Switches: - debug ........ : Off - html ......... : no Documentation tools: - Doxygen ...... : yes - LaTeX ........ : yes - Dvips ........ : yes - GhostScript .. : yes - Dot .......... : no Testing tools: - Diff ......... : yes External libs: - MKL .......... : - BOOST ........ : /home/jiaxu/amber12/AmberTools/src/boost-1.38.0 - LOG4CXX ...... : - XERCES ....... : - QT ........... : Compiler/linker flags/libs/defs: - CPPFLAGS ..... : - CC ........... : gcc - CFLAGS ....... : -O2 -fPIC -DHAVE_ZLIB - CXX .......... : g++ - CXXFLAGS ..... : -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB - LDFLAGS ...... : - LIBS ......... : - FLIBS ........ : -lz - C99 OK ....... : yes - ZLIB ......... : yes ------------------------------------------------------------------------------ Now type 'make && make install' to build and install MTKpp-0.2.0 package ------------------------------------------------------------------------------