Dear AMBER users,
I am trying to set up a simulation for a protein + ligand system with
polarizable force field (ff02).
I know that, for system like protein + ligand, antechamber can take care
for the parameters of ligand in case of non-polarizable environment.
My question is that how to set up the parameters for the ligand (an organic
molecule) in a polarizable condition.
Can I do the same with antechamber ?
If NOT, what is the best way to perform the complex simulation with
polarizable force field for for protein and ligand as well?
Your kind suggestions are highly appreciated.
Thanks
Jagur
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Received on Tue Nov 27 2012 - 15:00:02 PST
