Re: [AMBER] Problem with "make install" after "./configure intel"

From: Su, Shiquan <ssu2.utk.edu>
Date: Tue, 13 Nov 2012 21:50:18 +0000

The serial version finished "make install" after "./configure -nomtkpp intel". I hope the amber group can still help me to get the error about "ld: cannot find -lStatistics" corrected.
Now I am going to working on "configure -cuda -nomtkpp intel" and "configure -mpi -cuda -nomtkpp intel".



Hi,

It seems like the issue is with MtkPP, so if you don't require this
functionality on Keeneland try re-configuring with '-nomtkpp' and
re-compiling.

-Dan
On Nov 13, 2012, at 4:37 PM, Su, Shiquan wrote:

> Please save your old package before you do that. I think I got the intel version compiled successfully few weeks ago. At that time the latest bug fix is 27 and 8. Now it is 28 and 8, and the code is broke.
>
> On Nov 13, 2012, at 4:28 PM, Thomas Cheatham wrote:
>
>>
>>> I tried to install amber 12 on Keeneland full scale system. My module
>>> list is below. I get the error about "ld: cannot find -lStatistics". How
>>> should I deal with this?
>>
>> Hmmn, I am able to install and run it just fine... I'm compiling it again
>> right now to see if it was some very recent update that causes issues.
>>
>> ( /nics/d/home/tec3/scratch-kid/amber12-4b/amber12 )
>>
>> --tom
>>
>>
>>> [shiquan1.kfslogin1 amber12]$ module list
>>> Currently Loaded Modulefiles:
>>> 1) torque/2.5.11 4) intel/2011_sp1.11.339 7) PE-intel 10) netcdf/4.1.1
>>> 2) moab/6.1.5 5) gold 8) szip/2.1 11) cuda/4.2
>>> 3) mkl/2011_sp1.11.339 6) swtools 9) hdf5/1.8.6 12) openmpi/1.6.1-intel
>>
>> [I do not have swtools/netcdf loaded or szip but otherwise the same
>> modules]
>>
>>
>> \-/ Thomas E. Cheatham, III (Associate Professor)
>> -/- Department of Medicinal Chemistry, College of Pharmacy
>> /-\ University of Utah, 30 S 2000 E, SH 201, Salt Lake City, UT 84112
>> \-/
>> -/- tec3.utah.edu (801) 587-9652; FAX: (801) 585-9119
>> /-\ BPRP295A http://www.chpc.utah.edu/~cheatham
>>
>>
>>
>
>
>
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>



_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Tue Nov 13 2012 - 14:00:03 PST
Custom Search