Hi,
It seems like the issue is with MtkPP, so if you don't require this
functionality on Keeneland try re-configuring with '-nomtkpp' and
re-compiling.
-Dan
On Tue, Nov 13, 2012 at 2:16 PM, Su, Shiquan <ssu2.utk.edu> wrote:
>
> Dear Amber team:
> I tried to install amber 12 on Keeneland full scale system. My module list is below. I get the error about "ld: cannot find -lStatistics". How should I deal with this?
> Thank you.
>
> [shiquan1.kfslogin1 amber12]$ module list
> Currently Loaded Modulefiles:
> 1) torque/2.5.11 4) intel/2011_sp1.11.339 7) PE-intel 10) netcdf/4.1.1
> 2) moab/6.1.5 5) gold 8) szip/2.1 11) cuda/4.2
> 3) mkl/2011_sp1.11.339 6) swtools 9) hdf5/1.8.6 12) openmpi/1.6.1-intel
>
> Making all in tools
> make[4]: Entering directory `/nics/e/sw/keeneland-centos6.2/amber/12/centos6.2_intel2011_sp1.11.339/amber12/AmberTools/src/mtkpp/tools'
> icpc -DHAVE_CONFIG_H -I. -I.. -I/sw/kfs/amber/12/centos6.2_intel2011_sp1.11.339/amber12/AmberTools/src/boost-1.38.0 -I/include -I../src -I../include -I../src/eigen3b2 -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -MT MTKppConstants.o -MD -MP -MF .deps/MTKppConstants.Tpo -c -o MTKppConstants.o MTKppConstants.cpp
> mv -f .deps/MTKppConstants.Tpo .deps/MTKppConstants.Po
> /bin/sh ../libtool --tag=CXX --mode=link icpc -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -L/sw/kfs/amber/12/centos6.2_intel2011_sp1.11.339/amber12/AmberTools/src/mtkpp/src/Diagnostics -L../src/Molecule -L../src/Log -L../src/Graph -L../src/GA -L../src/Parsers -L../src/tinyxml -o MTKppConstants MTKppConstants.o -lDiagnostics -lMolecule -lLog -lGraph -lGA -lParsers -ltinyxml
> libtool: link: icpc -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -o MTKppConstants MTKppConstants.o -L/sw/kfs/amber/12/centos6.2_intel2011_sp1.11.339/amber12/AmberTools/src/mtkpp/src/Diagnostics -L../src/Molecule -L../src/Log -L../src/Graph -L../src/GA -L../src/Parsers -L../src/tinyxml /sw/kfs/amber/12/centos6.2_intel2011_sp1.11.339/amber12/AmberTools/src/mtkpp/src/Molecule/.libs/libMolecule.a -L/sw/kfs/amber/12/centos6.2_intel2011_sp1.11.339/amber12/AmberTools/src/mtkpp/src/Graph/amber12 -L/sw/kfs/amber/12/centos6.2_intel2011_sp1.11.339/amber12/AmberTools/src/mtkpp/src/Log/amber12 -L/sw/kfs/amber/12/centos6.2_intel2011_sp1.11.339/amber12/AmberTools/src/mtkpp/src/Diagnostics/amber12 /sw/kfs/amber/12/centos6.2_intel2011_sp1.11.339/amber12/AmberTools/src/mtkpp/src/Log/.libs/libLog.a /sw/kfs/amber/12/centos6.2_intel2011_sp1.11.339/amber12/AmberTools/src/mtkpp/src/Graph/.libs/libGraph.a /sw/kfs/amber/12/centos6.2_intel2011_sp1.11.339/amber12/AmberTools/src/mtkpp/src/GA/.libs/libGA.a /
sw/kfs/amber/12/centos6.2_intel2011_sp1.11.339/amber12/AmberTools/src/mtkpp/src/Parsers/.libs/libParsers.a -L/sw/kfs/amber/12/centos6.2_intel2011_sp1.11.339/amber12/AmberTools/src/mtkpp/src/Molecule/amber12 -L/sw/kfs/amber/12/centos6.2_intel2011_sp1.11.339/amber12/AmberTools/src/mtkpp/src/Statistics/amber12 -L/sw/kfs/amber/12/centos6.2_intel2011_sp1.11.339/amber12/AmberTools/src/mtkpp/src/GA/amber12 -L/sw/kfs/amber/12/centos6.2_intel2011_sp1.11.339/amber12/AmberTools/src/mtkpp/src/tinyxml/amber12 ../src/Molecule/.libs/libMolecule.a ../src/Graph/.libs/libGraph.a /sw/kfs/amber/12/centos6.2_intel2011_sp1.11.339/amber12/AmberTools/src/mtkpp/src/Diagnostics/.libs/libDiagnostics.a -lz -lStatistics ../src/Log/.libs/libLog.a ../src/GA/.libs/libGA.a ../src/tinyxml/.libs/libtinyxml.a /sw/kfs/amber/12/centos6.2_intel2011_sp1.11.339/amber12/AmberTools/src/mtkpp/src/tinyxml/.libs/libtinyxml.a
> ld: cannot find -lStatistics
> make[4]: *** [MTKppConstants] Error 1
> make[4]: Leaving directory `/nics/e/sw/keeneland-centos6.2/amber/12/centos6.2_intel2011_sp1.11.339/amber12/AmberTools/src/mtkpp/tools'
> make[3]: *** [all-recursive] Error 1
> make[3]: Leaving directory `/nics/e/sw/keeneland-centos6.2/amber/12/centos6.2_intel2011_sp1.11.339/amber12/AmberTools/src/mtkpp'
> make[2]: *** [all] Error 2
> make[2]: Leaving directory `/nics/e/sw/keeneland-centos6.2/amber/12/centos6.2_intel2011_sp1.11.339/amber12/AmberTools/src/mtkpp'
> make[1]: *** [install_mtkpp] Error 2
> make[1]: Leaving directory `/nics/e/sw/keeneland-centos6.2/amber/12/centos6.2_intel2011_sp1.11.339/amber12/AmberTools/src'
> make: *** [install] Error 2
>
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--
-------------------------
Daniel R. Roe, PhD
Department of Medicinal Chemistry
University of Utah
30 South 2000 East, Room 201
Salt Lake City, UT 84112-5820
http://home.chpc.utah.edu/~cheatham/
(801) 587-9652
(801) 585-9119 (Fax)
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Received on Tue Nov 13 2012 - 13:30:02 PST
