On Wed, Nov 7, 2012 at 7:25 AM, Sneha Menon <sneha.menon15.gmail.com> wrote:
> Dear all,
>
> I encountered a problem while trying to run NAMD 2.8 using Amber
> forcefield. I created the prmtop and inpcrd files using AmberTools 1.2 and
>
Did you use AmberTools 1.2 or AmberTools 12? Version 1.2 came out with
Amber 10 ~4 years ago. Version 12 came out last April.
Also, I would suggest contacting the NAMD mailing list as well, since they
will be more experienced debugging NAMD issues (their prmtop parser has
been rather fragile with respect to new sections that have been added).
Good luck,
Jason
--
Jason M. Swails
Quantum Theory Project,
University of Florida
Ph.D. Candidate
352-392-4032
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Received on Wed Nov 07 2012 - 11:30:04 PST
