[AMBER] Umbrella sampling with pmemd

From: Sajeewa Pemasinghe <sajeewasp.gmail.com>
Date: Wed, 7 Nov 2012 01:59:17 -0500

Hi all,

I am going to do umbrella sampling. My restraints are of the form

&rst iat=15360,15377, r1=0.0, r2=11.8, r3=11.8, r4=100.0, rk2 = 30.0, rk3
= 30.0, /

where r2/r3 have been specified as the Cartesian distance between the two
atoms specified by iat. Does PMEMD support umbrella sampling with this kind
of constraints?

Thank you

Sajeewa Dewage
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Received on Tue Nov 06 2012 - 23:00:02 PST
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