Hi Amber users,
Are there any plans to include the string method to find minimum free
energy paths (Vanden-Eijnden, Phys Rev B, 2002) in future versions of
Amber, and if so, is there a working version of the program already? I
am currently trying out the nudged elastic band method but it is not
as widely implemented as the string method, and as far as I know, it
has not been applied to large proteins yet.
-Yaw Sing
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Received on Thu Nov 01 2012 - 07:00:05 PDT
