Hi,
I replied to this a few days ago but maybe it got lost in the shuffle.
> I think you can get what
> you want by just using the distance command. For example, if your
> solute is residues 1 to 12 and you want the distance of atom NZ in
> residue 10 from the center of mass of the solute:
>
> distance :10.NZ :1-12
Hopefully this is what you're looking for.
-Dan
On Fri, Oct 26, 2012 at 3:04 PM, Amy Davenport <adavenpo.ucsd.edu> wrote:
> Ok, I see your point.
> Maybe then my question should be : is there a way to calculate the radius of gyration of a single atom with respect to the rest of the protein? Or the rest of the protein minus the amino acid that contains that atom?
> Thanks
>
>
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--
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Daniel R. Roe, PhD
Department of Medicinal Chemistry
University of Utah
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Received on Fri Oct 26 2012 - 15:00:02 PDT
