[AMBER] angle between axes of two helices

From: vaibhav dixit <vaibhavadixit.gmail.com>
Date: Thu, 11 Oct 2012 10:54:38 +0530

Dear Amber community members,
I'm interested to calculate angle between axes of two helices to understand
how they are moving relative to each other during the MD.
I would also like to analyze this parameter in a PDB file.
Which tools within Amber12, vmd or pymol can perform this type of
analysis? Please suggestion any other parameter that I must check to
understand their relative movement.
Thank you.

-- 
With regards
Vaibhav A. Dixit
Ph.D. Scholar
Department of Medicinal Chemistry
Natl. Inst. Pharm. Edu. & Res. (NIPER)
Sector 67, Phase X,  S.A.S. Nagar (Mohali)
Punjab -160 062 INDIA
Phone (Mobile): +919915214408
E-mail: vaibhavadixit.gmail.com
www.niper.nic.in
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Received on Wed Oct 10 2012 - 22:30:02 PDT