I was trying to run a simulation according to Tutorial A11 (Pyranose ring
When I finish the "finer" run using Implicit solvent i get a restart file,
containing the final velocities. In order to create the explicit solvent
job i transform prmtop and inpcrd files to pdb and I use tleap to create
the solvated files and i export them. With this procedure I loose all
velocities, so when i try to run the "flooding" procedure using the mdin
file from the tutorial i get an error "no velocities found", because of
the "irest =1, ntx =5" command.
How can overcome this error? Propably i am missing something.
In the tutorial how from the restart file of implicit solvent someone goes
to "flooding" using explicit water?
Thank for your time,
Dr Giorgos Lamprinidis
Researcher & Laboratory Assistant Staff
Faculty of Pharmacy
University of Athens - Greece
tel: +30 2107274304
fax: +30 2107274747
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Received on Mon Oct 08 2012 - 13:00:03 PDT