Re: [AMBER] X11 problems on Mac OS X 10.8

From: Jason Swails <jason.swails.gmail.com>
Date: Thu, 4 Oct 2012 12:02:56 -0400

On Thu, Oct 4, 2012 at 11:08 AM, Jonathan Gough
<jonathan.d.gough.gmail.com>wrote:

> That fixed that error. But I am back stuck with an error due to clang.
>

I've never had this problem, and I don't even have clang installed via
MacPorts.


>
> the error is:
>
> mv libsqm.a /Users/jonathangough/amber12/lib
> gfortran -DBINTRAJ -c -O0 -ffree-form -I../../AmberTools/src/pbsa
> -I../../AmberTools/src/sqm -I../../AmberTools/src/rism -I../../include
> -I/Users/jonathangough/amber12/include
> -I/Users/jonathangough/amber12/include -o file_io_dat.o file_io_dat.F90
> /opt/local/bin/as: assembler (/opt/local/bin/clang) not installed
>
> I used macports to install clang-2.9
>
> new-host:bin jonathangough$
> new-host:bin jonathangough$ whereis clang
> /usr/bin/clang
> new-host:bin jonathangough$
>
> and where it is looking for it - here is what I have
>
> ew-host:bin jonathangough$ pwd
> /opt/local/bin
> new-host:bin jonathangough$ ls clang*
> clang++-mp-2.9 clang-mp-2.9
> new-host:bin jonathangough$
>
> any insight?
>

What compilers are you using? Installed from MacPorts? What does "which
<compiler>" return, where <compiler> is gcc gfortran and g++?

HTH,
Jason


-- 
Jason M. Swails
Quantum Theory Project,
University of Florida
Ph.D. Candidate
352-392-4032
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Received on Thu Oct 04 2012 - 09:30:03 PDT
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