-I: Adding /software/gilgal/ambertools12-intel-11.0.x/amber12/dat/leap/prep to search path.
-I: Adding /software/gilgal/ambertools12-intel-11.0.x/amber12/dat/leap/lib to search path.
-I: Adding /software/gilgal/ambertools12-intel-11.0.x/amber12/dat/leap/parm to search path.
-I: Adding /software/gilgal/ambertools12-intel-11.0.x/amber12/dat/leap/cmd to search path.
-f: Source leapGLB.med.in.

Welcome to LEaP!
(no leaprc in search path)
Sourcing: ./leapGLB.med.in
----- Source: /software/gilgal/ambertools12-intel-11.0.x/amber12/dat/leap/cmd/leaprc.GLYCAM_06h
----- Source of /software/gilgal/ambertools12-intel-11.0.x/amber12/dat/leap/cmd/leaprc.GLYCAM_06h done
Loading parameters: /software/gilgal/ambertools12-intel-11.0.x/amber12/dat/leap/parm/GLYCAM_06h.dat
Reading title:
GLYCAM_06_H PARAMETERS (FOR AMBER 11.0, RESP 0.010), COPYRIGHT CCRC 2011
Loading Prep file: /software/gilgal/ambertools12-intel-11.0.x/amber12/dat/leap/prep/GLYCAM_06h.prep
Loading library: /software/gilgal/ambertools12-intel-11.0.x/amber12/dat/leap/lib/GLYCAM_amino_06h.lib
Loading library: /software/gilgal/ambertools12-intel-11.0.x/amber12/dat/leap/lib/GLYCAM_aminoct_06h.lib
Loading library: /software/gilgal/ambertools12-intel-11.0.x/amber12/dat/leap/lib/GLYCAM_aminont_06h.lib
Loading library: /software/gilgal/ambertools12-intel-11.0.x/amber12/dat/leap/lib/solvents.lib
Loading library: /software/gilgal/ambertools12-intel-11.0.x/amber12/dat/leap/lib/ions08.lib
Loading parameters: /software/gilgal/ambertools12-intel-11.0.x/amber12/dat/leap/parm/frcmod.ionsjc_tip3p
Reading force field modification type file (frcmod)
Reading title:
Monovalent ion parameters for Ewald and TIP3P water from Joung & Cheatham JPCB (2008)
Loading library: ./glbVAC.lib
Loading library: ./glbVAC.lib
Loading PDB file: ./glbComVAC.pdb
  total atoms in file: 21
  Leap added 1 missing atom according to residue templates:
       1 H / lone pairs
Writing pdb file: glbMVAC.pdb
Checking Unit.
ERROR: The unperturbed charge of the unit: 0.194000 is not integral.
WARNING: The unperturbed charge of the unit: 0.194000 is not zero.

 -- ignoring the error and warning.

Building topology.
Building atom parameters.
Building bond parameters.
Building angle parameters.
Building proper torsion parameters.
Building improper torsion parameters.
 total 0 improper torsions applied
Building H-Bond parameters.
Not Marking per-residue atom chain types.
Marking per-residue atom chain types.
 (no restraints)
	Quit