cd cuda && make -k test.pmemd.cuda PREC_MODEL=SPFP make[1]: Entering directory `/scratch/amber12-20120904-woody1.4685/test/cuda' ------------------------------------ Running CUDA Implicit solvent tests. Precision Model = SPFP ------------------------------------ cd gb_ala3/ && ./Run.igb1_ntc1_min SPFP /scratch/amber12-20120904-woody1.4685/include/netcdf.mod diffing igb1_ntc1_min.out.GPU_SPFP with igb1_ntc1_min.out PASSED ============================================================== cd gb_ala3/ && ./Run.irest1_ntt0_igb1_ntc1 SPFP /scratch/amber12-20120904-woody1.4685/include/netcdf.mod diffing irest1_ntt0_igb1_ntc1.out.GPU_SPFP with irest1_ntt0_igb1_ntc1.out PASSED ============================================================== diffing irest1_ntt0_igb1_ntc1.rst.GPU_SPFP with irest1_ntt0_igb1_ntc1.rst PASSED ============================================================== diffing irest1_ntt0_igb1_ntc1.mdcrd.GPU_SPFP with irest1_ntt0_igb1_ntc1.mdcrd PASSED ============================================================== cd gb_ala3/ && ./Run.irest0_ntt0_igb1_ntc1_hotstart SPFP /scratch/amber12-20120904-woody1.4685/include/netcdf.mod diffing irest0_ntt0_igb1_ntc1_hotstart.out.GPU_SPFP with irest0_ntt0_igb1_ntc1_hotstart.out PASSED ============================================================== cd gb_ala3/ && ./Run.irest0_ntt0_igb1_ntc1_coldstart SPFP /scratch/amber12-20120904-woody1.4685/include/netcdf.mod diffing irest0_ntt0_igb1_ntc1_coldstart.out.GPU_SPFP with irest0_ntt0_igb1_ntc1_coldstart.out PASSED ============================================================== cd gb_ala3/ && ./Run.irest1_ntt0_igb1_ntc2 SPFP /scratch/amber12-20120904-woody1.4685/include/netcdf.mod diffing irest1_ntt0_igb1_ntc2.out.GPU_SPFP with irest1_ntt0_igb1_ntc2.out PASSED ============================================================== diffing irest1_ntt0_igb1_ntc2.rst.GPU_SPFP with irest1_ntt0_igb1_ntc2.rst PASSED ============================================================== diffing irest1_ntt0_igb1_ntc2.mdcrd.GPU_SPFP with irest1_ntt0_igb1_ntc2.mdcrd PASSED ============================================================== cd gb_ala3/ && ./Run.irest1_ntt0_igb2_ntc1 SPFP /scratch/amber12-20120904-woody1.4685/include/netcdf.mod diffing irest1_ntt0_igb2_ntc1.out.GPU_SPFP with irest1_ntt0_igb2_ntc1.out PASSED ============================================================== cd gb_ala3/ && ./Run.irest1_ntt0_igb2_ntc2 SPFP /scratch/amber12-20120904-woody1.4685/include/netcdf.mod diffing irest1_ntt0_igb2_ntc2.out.GPU_SPFP with irest1_ntt0_igb2_ntc2.out PASSED ============================================================== cd gb_ala3/ && ./Run.irest1_ntt0_igb5_ntc1 SPFP /scratch/amber12-20120904-woody1.4685/include/netcdf.mod diffing irest1_ntt0_igb5_ntc1.out.GPU_SPFP with irest1_ntt0_igb5_ntc1.out PASSED ============================================================== cd gb_ala3/ && ./Run.irest1_ntt0_igb7_ntc2 SPFP /scratch/amber12-20120904-woody1.4685/include/netcdf.mod diffing irest1_ntt0_igb7_ntc2.out.GPU_SPFP with irest1_ntt0_igb7_ntc2.out PASSED ============================================================== cd gb_ala3/ && ./Run.irest1_ntt0_igb8_ntc2 SPFP /scratch/amber12-20120904-woody1.4685/include/netcdf.mod diffing irest1_ntt0_igb8_ntc2.out.GPU_SPFP with irest1_ntt0_igb8_ntc2.out PASSED ============================================================== cd gb_ala3/ && ./Run.irest1_ntt0_igb5_ntc2 SPFP /scratch/amber12-20120904-woody1.4685/include/netcdf.mod diffing irest1_ntt0_igb5_ntc2.out.GPU_SPFP with irest1_ntt0_igb5_ntc2.out PASSED ============================================================== cd gb_ala3/ && ./Run.irest1_ntt0_igb5_ntc2_ntr1 SPFP /scratch/amber12-20120904-woody1.4685/include/netcdf.mod diffing irest1_ntt0_igb5_ntc2_ntr1.out.GPU_SPFP with irest1_ntt0_igb5_ntc2_ntr1.out PASSED ============================================================== cd gb_ala3/ && ./Run.irest1_ntt0_igb5_ntc2_saltcon SPFP /scratch/amber12-20120904-woody1.4685/include/netcdf.mod diffing irest1_ntt0_igb5_ntc2_saltcon.out.GPU_SPFP with irest1_ntt0_igb5_ntc2_saltcon.out PASSED ============================================================== cd gb_ala3/ && ./Run.irest1_ntt0_igb5_ntc2_rgbmax SPFP /scratch/amber12-20120904-woody1.4685/include/netcdf.mod diffing irest1_ntt0_igb5_ntc2_rgbmax.out.GPU_SPFP with irest1_ntt0_igb5_ntc2_rgbmax.out PASSED ============================================================== cd gb_ala3/ && ./Run.irest1_ntt0_igb5_ntc2_alpb SPFP /scratch/amber12-20120904-woody1.4685/include/netcdf.mod diffing irest1_ntt0_igb5_ntc2_alpb.out.GPU_SPFP with irest1_ntt0_igb5_ntc2_alpb.out PASSED ============================================================== cd gb_ala3/ && ./Run.irest1_ntt1_igb1_ntc2 SPFP /scratch/amber12-20120904-woody1.4685/include/netcdf.mod diffing irest1_ntt1_igb1_ntc2.out.GPU_SPFP with irest1_ntt1_igb1_ntc2.out PASSED ============================================================== cd chamber/dhfr/ && ./Run.dhfr_charmm.min SPFP /scratch/amber12-20120904-woody1.4685/include/netcdf.mod diffing mdout.dhfr_charmm_min.GPU_SPFP with mdout.dhfr_charmm_min possible FAILURE: check mdout.dhfr_charmm_min.dif ============================================================== cd chamber/dhfr_cmap/ && ./Run.dhfr_charmm.min SPFP /scratch/amber12-20120904-woody1.4685/include/netcdf.mod forrtl: error (78): process killed (SIGTERM) Image PC Routine Line Source Unknown FFFFFFFFFF600154 Unknown Unknown Unknown ./Run.dhfr_charmm.min: Program error make[1]: [test.pmemd.cuda.gb.serial] Error 1 (ignored) cd nucleosome/ && ./Run_min.1 SPFP /scratch/amber12-20120904-woody1.4685/include/netcdf.mod diffing nucleosome_min.out.GPU_SPFP with nucleosome_min.out possible FAILURE: check nucleosome_min.out.dif ============================================================== --------------------------------------------- Running Extended CUDA Implicit solvent tests. Precision Model = SPFP --------------------------------------------- cd trpcage/ && ./Run_md_trpcage SPFP /scratch/amber12-20120904-woody1.4685/include/netcdf.mod diffing trpcage_md.out.GPU_SPFP with trpcage_md.out PASSED ============================================================== cd myoglobin/ && ./Run_md_myoglobin SPFP /scratch/amber12-20120904-woody1.4685/include/netcdf.mod diffing myoglobin_md.out.GPU_SPFP with myoglobin_md.out PASSED ============================================================== cd myoglobin/ && ./Run_md_myoglobin_igb7 SPFP /scratch/amber12-20120904-woody1.4685/include/netcdf.mod diffing myoglobin_md_igb7.out.GPU_SPFP with myoglobin_md_igb7.out PASSED ============================================================== cd myoglobin/ && ./Run_md_myoglobin_igb8 SPFP /scratch/amber12-20120904-woody1.4685/include/netcdf.mod diffing myoglobin_md_igb8.out.GPU_SPFP with myoglobin_md_igb8.out PASSED ============================================================== cd chamber/dhfr/ && ./Run.dhfr_charmm.md SPFP /scratch/amber12-20120904-woody1.4685/include/netcdf.mod diffing mdout.dhfr_charmm_md.GPU_SPFP with mdout.dhfr_charmm_md PASSED ============================================================== cd chamber/dhfr_cmap/ && ./Run.dhfr_charmm.md SPFP /scratch/amber12-20120904-woody1.4685/include/netcdf.mod forrtl: error (78): process killed (SIGTERM) Image PC Routine Line Source libcuda.so 00002B543C09C5BD Unknown Unknown Unknown Stack trace terminated abnormally. ./Run.dhfr_charmm.md: Program error make[1]: [test.pmemd.cuda.gb] Error 1 (ignored) cd nucleosome/ && ./Run_md.1 SPFP /scratch/amber12-20120904-woody1.4685/include/netcdf.mod diffing nucleosome_md1_ntt1.out.GPU_SPFP with nucleosome_md1_ntt1.out PASSED ============================================================== cd nucleosome/ && ./Run_md.2 SPFP /scratch/amber12-20120904-woody1.4685/include/netcdf.mod diffing nucleosome_md2_ntt0.out.GPU_SPFP with nucleosome_md2_ntt0.out PASSED ============================================================== cd amd/rna_gb && ./Run.gb.amd2 SPFP /scratch/amber12-20120904-woody1.4685/include/netcdf.mod diffing mdout.gb.amd2.GPU_SPFP with mdout.gb.amd2 PASSED ============================================================== cd amd/rna_gb && ./Run.gb.amd3 SPFP /scratch/amber12-20120904-woody1.4685/include/netcdf.mod diffing mdout.gb.amd3.GPU_SPFP with mdout.gb.amd3 PASSED ============================================================== cd nmropt/gb/angle/ && ./Run.nmropt_1angle_gb SPFP /scratch/amber12-20120904-woody1.4685/include/netcdf.mod diffing mdout.GPU_SPFP with mdout PASSED ============================================================== diffing angle_gb_vs_t.GPU_SPFP with angle_gb_vs_t PASSED ============================================================== cd nmropt/gb/distance/ && ./Run.dist_gb SPFP /scratch/amber12-20120904-woody1.4685/include/netcdf.mod diffing mdout.GPU_SPFP with mdout PASSED ============================================================== diffing dist_gb_vs_t.GPU_SPFP with dist_gb_vs_t PASSED ============================================================== cd nmropt/gb/nmropt_1_torsion/ && ./Run.nmropt_1_torsion SPFP /scratch/amber12-20120904-woody1.4685/include/netcdf.mod diffing mdout.GPU_SPFP with mdout PASSED ============================================================== diffing torsion_gb.dat.GPU_SPFP with torsion_gb.dat PASSED ============================================================== cd nmropt/gb/tautp/ && ./Run.nmropt_1tautp_gb SPFP /scratch/amber12-20120904-woody1.4685/include/netcdf.mod diffing mdout.GPU_SPFP with mdout PASSED ============================================================== cd nmropt/gb/temp/ && ./Run.nmropt_1temp_gb SPFP /scratch/amber12-20120904-woody1.4685/include/netcdf.mod diffing mdout.GPU_SPFP with mdout PASSED ============================================================== --------------------------------------------- Running Extended CUDA Explicit solvent tests. Precision Model = SPFP --------------------------------------------- cd 4096wat/ && ./Run.pure_wat SPFP /scratch/amber12-20120904-woody1.4685/include/netcdf.mod diffing mdout.pure_wat.GPU_SPFP with mdout.pure_wat PASSED ============================================================== cd 4096wat_oct/ && ./Run.pure_wat_oct_NVE SPFP /scratch/amber12-20120904-woody1.4685/include/netcdf.mod diffing mdout.pure_wat_oct_nve.GPU_SPFP with mdout.pure_wat_oct_nve PASSED ============================================================== diffing mdcrd.pure_wat_oct_nve.GPU_SPFP with mdcrd.pure_wat_oct_nve possible FAILURE: check mdcrd.pure_wat_oct_nve.dif ============================================================== cd 4096wat_oct/ && ./Run.pure_wat_oct_NVT_NTT1 SPFP /scratch/amber12-20120904-woody1.4685/include/netcdf.mod diffing mdout.pure_wat_oct_nvt_ntt1.GPU_SPFP with mdout.pure_wat_oct_nvt_ntt1 PASSED ============================================================== diffing mdcrd.pure_wat_oct_nvt_ntt1.GPU_SPFP with mdcrd.pure_wat_oct_nvt_ntt1 PASSED ============================================================== cd 4096wat_oct/ && ./Run.pure_wat_oct_NPT_NTT1 SPFP /scratch/amber12-20120904-woody1.4685/include/netcdf.mod diffing mdout.pure_wat_oct_npt_ntt1.GPU_SPFP with mdout.pure_wat_oct_npt_ntt1 PASSED ============================================================== diffing mdcrd.pure_wat_oct_npt_ntt1.GPU_SPFP with mdcrd.pure_wat_oct_npt_ntt1 PASSED ============================================================== cd large_solute_count/ && ./Run.ntb2_ntt1 SPFP /scratch/amber12-20120904-woody1.4685/include/netcdf.mod diffing mdout.ntb2_ntt1.GPU_SPFP with mdout.ntb2_ntt1 PASSED ============================================================== cd jac/ && ./Run.jac SPFP /scratch/amber12-20120904-woody1.4685/include/netcdf.mod diffing jac.out.GPU_SPFP with jac.out PASSED ============================================================== cd dhfr/ && ./Run.dhfr SPFP /scratch/amber12-20120904-woody1.4685/include/netcdf.mod diffing mdout.dhfr.GPU_SPFP with mdout.dhfr possible FAILURE: check mdout.dhfr.dif ============================================================== cd dhfr/ && ./Run.dhfr.ntr1 SPFP /scratch/amber12-20120904-woody1.4685/include/netcdf.mod diffing mdout.dhfr.ntr1.GPU_SPFP with mdout.dhfr.ntr1 possible FAILURE: check mdout.dhfr.ntr1.dif ============================================================== cd dhfr/ && ./Run.dhfr.ntb2 SPFP /scratch/amber12-20120904-woody1.4685/include/netcdf.mod diffing mdout.dhfr.ntb2.GPU_SPFP with mdout.dhfr.ntb2 PASSED ============================================================== cd dhfr/ && ./Run.dhfr.ntb2_ntt1 SPFP /scratch/amber12-20120904-woody1.4685/include/netcdf.mod diffing mdout.dhfr.ntb2_ntt1.GPU_SPFP with mdout.dhfr.ntb2_ntt1 possible FAILURE: check mdout.dhfr.ntb2_ntt1.dif ============================================================== cd dhfr/ && ./Run.dhfr.ntb2_ntt1_ntr1 SPFP /scratch/amber12-20120904-woody1.4685/include/netcdf.mod diffing mdout.dhfr.ntb2_ntt1_ntr1.GPU_SPFP with mdout.dhfr.ntb2_ntt1_ntr1 possible FAILURE: check mdout.dhfr.ntb2_ntt1_ntr1.dif ============================================================== cd dhfr/ && ./Run.dhfr.noshake SPFP /scratch/amber12-20120904-woody1.4685/include/netcdf.mod diffing mdout.dhfr.noshake.GPU_SPFP with mdout.dhfr.noshake PASSED ============================================================== cd chamber/dhfr_pbc/ && ./Run.dhfr_pbc_charmm_noshake.md SPFP /scratch/amber12-20120904-woody1.4685/include/netcdf.mod diffing mdout.dhfr_charmm_pbc_noshake_md.GPU_SPFP with mdout.dhfr_charmm_pbc_noshake_md PASSED ============================================================== cd chamber/dhfr_cmap_pbc/ && ./Run.dhfr_cmap_pbc_charmm.md SPFP /scratch/amber12-20120904-woody1.4685/include/netcdf.mod Killed ./Run.dhfr_cmap_pbc_charmm.md: Program error make[1]: [test.pmemd.cuda.pme] Error 1 (ignored) cd chamber/dhfr_cmap_pbc/ && ./Run.dhfr_cmap_pbc_charmm_NPT.md SPFP /scratch/amber12-20120904-woody1.4685/include/netcdf.mod Killed ./Run.dhfr_cmap_pbc_charmm_NPT.md: Program error make[1]: [test.pmemd.cuda.pme] Error 1 (ignored) cd chamber/dhfr_cmap_pbc/ && ./Run.dhfr_cmap_pbc_charmm_noshake.md SPFP /scratch/amber12-20120904-woody1.4685/include/netcdf.mod Killed ./Run.dhfr_cmap_pbc_charmm_noshake.md: Program error make[1]: [test.pmemd.cuda.pme] Error 1 (ignored) cd ips/ && ./Run.ips SPFP /scratch/amber12-20120904-woody1.4685/include/netcdf.mod diffing mdout.ips.GPU_SPFP with mdout.ips possible FAILURE: check mdout.ips.dif ============================================================== cd amd/dhfr_pme && ./Run.pme.amd1 SPFP /scratch/amber12-20120904-woody1.4685/include/netcdf.mod diffing mdout.pme.amd1.GPU_SPFP with mdout.pme.amd1 PASSED ============================================================== cd amd/dhfr_pme && ./Run.pme.amd2 SPFP /scratch/amber12-20120904-woody1.4685/include/netcdf.mod diffing mdout.pme.amd2.GPU_SPFP with mdout.pme.amd2 PASSED ============================================================== cd amd/dhfr_pme && ./Run.pme.amd3 SPFP /scratch/amber12-20120904-woody1.4685/include/netcdf.mod diffing mdout.pme.amd3.GPU_SPFP with mdout.pme.amd3 PASSED ============================================================== cd amd/gact_ips && ./Run.ips.amd1 SPFP /scratch/amber12-20120904-woody1.4685/include/netcdf.mod diffing mdout.ips.amd1.GPU_SPFP with mdout.ips.amd1 possible FAILURE: check mdout.ips.amd1.dif ============================================================== cd amd/gact_ips && ./Run.ips.amd2 SPFP /scratch/amber12-20120904-woody1.4685/include/netcdf.mod diffing mdout.ips.amd2.GPU_SPFP with mdout.ips.amd2 possible FAILURE: check mdout.ips.amd2.dif ============================================================== cd amd/gact_ips && ./Run.ips.amd3 SPFP /scratch/amber12-20120904-woody1.4685/include/netcdf.mod diffing mdout.ips.amd3.GPU_SPFP with mdout.ips.amd3 possible FAILURE: check mdout.ips.amd3.dif ============================================================== cd nmropt/pme/angle/ && ./Run.nmropt_1angle_pbc SPFP /scratch/amber12-20120904-woody1.4685/include/netcdf.mod diffing mdout.GPU_SPFP with mdout PASSED ============================================================== diffing angle_pbc_vs_t.GPU_SPFP with angle_pbc_vs_t PASSED ============================================================== cd nmropt/pme/distance/ && ./Run.dist_pbc SPFP /scratch/amber12-20120904-woody1.4685/include/netcdf.mod diffing mdout.GPU_SPFP with mdout PASSED ============================================================== diffing dist_pbc_vs_t.GPU_SPFP with dist_pbc_vs_t PASSED ============================================================== cd nmropt/pme/nmropt_1_torsion/ && ./Run.nmropt_1_torsion SPFP /scratch/amber12-20120904-woody1.4685/include/netcdf.mod diffing mdout.GPU_SPFP with mdout PASSED ============================================================== diffing torsion_pbc.dat.GPU_SPFP with torsion_pbc.dat PASSED ============================================================== cd nmropt/pme/tautp/ && ./Run.nmropt_1tautp_pbc SPFP /scratch/amber12-20120904-woody1.4685/include/netcdf.mod diffing mdout.GPU_SPFP with mdout PASSED ============================================================== cd nmropt/pme/temp/ && ./Run.nmropt_1temp_pbc SPFP /scratch/amber12-20120904-woody1.4685/include/netcdf.mod diffing mdout.GPU_SPFP with mdout PASSED ============================================================== ------------------------------------ Running CUDA Explicit solvent tests. Precision Model = SPFP ------------------------------------ cd tip4pew/ && ./Run.tip4pew_box_nvt SPFP /scratch/amber12-20120904-woody1.4685/include/netcdf.mod diffing mdout.tip4pew_box_nvt.GPU_SPFP with mdout.tip4pew_box_nvt PASSED ============================================================== cd tip4pew/ && ./Run.tip4pew_box_npt SPFP /scratch/amber12-20120904-woody1.4685/include/netcdf.mod Killed ./Run.tip4pew_box_npt: Program error make[1]: [test.pmemd.cuda.pme.serial] Error 1 (ignored) cd tip4pew/ && ./Run.tip4pew_oct_nvt SPFP /scratch/amber12-20120904-woody1.4685/include/netcdf.mod diffing mdout.tip4pew_oct_nvt.GPU_SPFP with mdout.tip4pew_oct_nvt PASSED ============================================================== cd tip4pew/ && ./Run.tip4pew_oct_npt SPFP /scratch/amber12-20120904-woody1.4685/include/netcdf.mod Killed ./Run.tip4pew_oct_npt: Program error make[1]: [test.pmemd.cuda.pme.serial] Error 1 (ignored) cd tip5p/ && ./Run.tip5p_box_nvt SPFP /scratch/amber12-20120904-woody1.4685/include/netcdf.mod diffing mdout.tip5p_box_nvt.GPU_SPFP with mdout.tip5p_box_nvt PASSED ============================================================== cd tip5p/ && ./Run.tip5p_box_npt SPFP /scratch/amber12-20120904-woody1.4685/include/netcdf.mod Killed ./Run.tip5p_box_npt: Program error make[1]: [test.pmemd.cuda.pme.serial] Error 1 (ignored) cd tip5p/ && ./Run.tip5p_oct_nvt SPFP /scratch/amber12-20120904-woody1.4685/include/netcdf.mod diffing mdout.tip5p_oct_nvt.GPU_SPFP with mdout.tip5p_oct_nvt PASSED ============================================================== cd tip5p/ && ./Run.tip5p_oct_npt SPFP /scratch/amber12-20120904-woody1.4685/include/netcdf.mod Killed ./Run.tip5p_oct_npt: Program error make[1]: [test.pmemd.cuda.pme.serial] Error 1 (ignored) cd dhfr/ && ./Run.dhfr.min SPFP /scratch/amber12-20120904-woody1.4685/include/netcdf.mod diffing mdout.dhfr.min.GPU_SPFP with mdout.dhfr.min PASSED ============================================================== cd chamber/dhfr_pbc/ && ./Run.dhfr_pbc_charmm_noshake.min SPFP /scratch/amber12-20120904-woody1.4685/include/netcdf.mod diffing mdout.dhfr_charmm_pbc_noshake_min.GPU_SPFP with mdout.dhfr_charmm_pbc_noshake_min possible FAILURE: check mdout.dhfr_charmm_pbc_noshake_min.dif ============================================================== cd chamber/dhfr_cmap_pbc/ && ./Run.dhfr_cmap_pbc_charmm.min SPFP /scratch/amber12-20120904-woody1.4685/include/netcdf.mod Killed ./Run.dhfr_cmap_pbc_charmm.min: Program error make[1]: [test.pmemd.cuda.pme.serial] Error 1 (ignored) cd chamber/dhfr_cmap_pbc/ && ./Run.dhfr_cmap_pbc_charmm_noshake.min SPFP /scratch/amber12-20120904-woody1.4685/include/netcdf.mod forrtl: error (78): process killed (SIGTERM) Image PC Routine Line Source libcuda.so 00002B54F7A595BD Unknown Unknown Unknown Stack trace terminated abnormally. ./Run.dhfr_cmap_pbc_charmm_noshake.min: Program error make[1]: [test.pmemd.cuda.pme.serial] Error 1 (ignored) make[1]: Leaving directory `/scratch/amber12-20120904-woody1.4685/test/cuda' 64 file comparisons passed 12 file comparisons failed 25 tests experienced errors