Please use Cuda 4.2. Nvcc v5.0 is not yet supported.
All the best
Ross
On Sep 28, 2012, at 8:49, 崔幼恬 <15261595350.163.com> wrote:
> dear friends:
> When I install completely CUDA-enabled Amber 12 in Ubuntu12,Cuda compilation tools release 5.0,tesla c2075, I type :make test
> the errors come up below:
> cd 4096wat/ && ./Run.pure_wat SPFP /home/ly/program/Amber12/include/netcdf.mod
> cudaMemcpyToSymbol: SetSim copy to cSim failed the launch timed out and was terminated
> ./Run.pure_wat: Program error
> make[3]: [test.pmemd.cuda.pme] error 1
> cd 4096wat_oct/ && ./Run.pure_wat_oct_NVE SPFP /home/ly/program/Amber12/include/netcdf.mod
> cudaMemcpyToSymbol: SetSim copy to cSim failed the launch timed out and was terminated
> ./Run.pure_wat_oct_NVE: Program error
> make[3]: [test.pmemd.cuda.pme] error 1
> cd 4096wat_oct/ && ./Run.pure_wat_oct_NVT_NTT1 SPFP /home/ly/program/Amber12/include/netcdf.mod
> cudaMemcpyToSymbol: SetSim copy to cSim failed the launch timed out and was terminated
> ./Run.pure_wat_oct_NVT_NTT1: Program error
> make[3]: [test.pmemd.cuda.pme] error 1
> cd 4096wat_oct/ && ./Run.pure_wat_oct_NPT_NTT1 SPFP /home/ly/program/Amber12/include/netcdf.mod
> cudaMemcpyToSymbol: SetSim copy to cSim failed the launch timed out and was terminated
> ./Run.pure_wat_oct_NPT_NTT1: Program error
> make[3]: [test.pmemd.cuda.pme] error 1
> cd large_solute_count/ && ./Run.ntb2_ntt1 SPFP /home/ly/program/Amber12/include/netcdf.mod
> cudaMemcpyToSymbol: SetSim copy to cSim failed the launch timed out and was terminated
> ./Run.ntb2_ntt1: Program error
> make[3]: [test.pmemd.cuda.pme] error 1
> cd jac/ && ./Run.jac SPFP /home/ly/program/Amber12/include/netcdf.mod
> cudaMemcpyToSymbol: SetSim copy to cSim failed the launch timed out and was terminated
> ./Run.jac: Program error
> make[3]: [test.pmemd.cuda.pme] error 1
> cd dhfr/ && ./Run.dhfr SPFP /home/ly/program/Amber12/include/netcdf.mod
> cudaMemcpyToSymbol: SetSim copy to cSim failed the launch timed out and was terminated
> ./Run.dhfr: Program error
> make[3]: [test.pmemd.cuda.pme] error 1
> cd dhfr/ && ./Run.dhfr.ntr1 SPFP /home/ly/program/Amber12/include/netcdf.mod
> cudaMemcpyToSymbol: SetSim copy to cSim failed the launch timed out and was terminated
> ./Run.dhfr.ntr1: Program error
> make[3]: [test.pmemd.cuda.pme] error 1
> cd dhfr/ && ./Run.dhfr.ntb2 SPFP /home/ly/program/Amber12/include/netcdf.mod
> cudaMemcpyToSymbol: SetSim copy to cSim failed the launch timed out and was terminated
> ./Run.dhfr.ntb2: Program error
> make[3]: [test.pmemd.cuda.pme] error 1
> cd dhfr/ && ./Run.dhfr.ntb2_ntt1 SPFP /home/ly/program/Amber12/include/netcdf.mod
> cudaMemcpyToSymbol: SetSim copy to cSim failed the launch timed out and was terminated
> ./Run.dhfr.ntb2_ntt1: Program error
> make[3]: [test.pmemd.cuda.pme] error 1
> cd dhfr/ && ./Run.dhfr.ntb2_ntt1_ntr1 SPFP /home/ly/program/Amber12/include/netcdf.mod
> cudaMemcpyToSymbol: SetSim copy to cSim failed the launch timed out and was terminated
> ./Run.dhfr.ntb2_ntt1_ntr1: Program error
> make[3]: [test.pmemd.cuda.pme] error 1
> cd dhfr/ && ./Run.dhfr.noshake SPFP /home/ly/program/Amber12/include/netcdf.mod
> cudaMemcpyToSymbol: SetSim copy to cSim failed the launch timed out and was terminated
> ./Run.dhfr.noshake: Program error
> make[3]: [test.pmemd.cuda.pme] error 1
> cd chamber/dhfr_pbc/ && ./Run.dhfr_pbc_charmm_noshake.md SPFP /home/ly/program/Amber12/include/netcdf.mod
> cudaMemcpyToSymbol: SetSim copy to cSim failed the launch timed out and was terminated
> ./Run.dhfr_pbc_charmm_noshake.md: Program error
> make[3]: [test.pmemd.cuda.pme] error 1
> cd chamber/dhfr_cmap_pbc/ && ./Run.dhfr_cmap_pbc_charmm.md SPFP /home/ly/program/Amber12/include/netcdf.mod
> cudaMemcpyToSymbol: SetSim copy to cSim failed the launch timed out and was terminated
> ./Run.dhfr_cmap_pbc_charmm.md: Program error
> make[3]: [test.pmemd.cuda.pme] error 1
> cd chamber/dhfr_cmap_pbc/ && ./Run.dhfr_cmap_pbc_charmm_NPT.md SPFP /home/ly/program/Amber12/include/netcdf.mod
> cudaMemcpyToSymbol: SetSim copy to cSim failed the launch timed out and was terminated
> ./Run.dhfr_cmap_pbc_charmm_NPT.md: Program error
> make[3]: [test.pmemd.cuda.pme] error 1
> cd chamber/dhfr_cmap_pbc/ && ./Run.dhfr_cmap_pbc_charmm_noshake.md SPFP /home/ly/program/Amber12/include/netcdf.mod
> cudaMemcpyToSymbol: SetSim copy to cSim failed the launch timed out and was terminated
> ./Run.dhfr_cmap_pbc_charmm_noshake.md: Program error
> make[3]: [test.pmemd.cuda.pme] error 1
> cd ips/ && ./Run.ips SPFP /home/ly/program/Amber12/include/netcdf.mod
> cudaMemcpyToSymbol: SetSim copy to cSim failed the launch timed out and was terminated
> ./Run.ips: Program error
> make[3]: [test.pmemd.cuda.pme] error 1
> cd amd/dhfr_pme && ./Run.pme.amd1 SPFP /home/ly/program/Amber12/include/netcdf.mod
> cudaMemcpyToSymbol: SetSim copy to cSim failed the launch timed out and was terminated
> ./Run.pme.amd1: Program error
> make[3]: [test.pmemd.cuda.pme] error 1
> cd amd/dhfr_pme && ./Run.pme.amd2 SPFP /home/ly/program/Amber12/include/netcdf.mod
> cudaMemcpyToSymbol: SetSim copy to cSim failed the launch timed out and was terminated
> ./Run.pme.amd2: Program error
> make[3]: [test.pmemd.cuda.pme] error 1
> cd amd/dhfr_pme && ./Run.pme.amd3 SPFP /home/ly/program/Amber12/include/netcdf.mod
> cudaMemcpyToSymbol: SetSim copy to cSim failed the launch timed out and was terminated
> ./Run.pme.amd3: Program error
> make[3]: [test.pmemd.cuda.pme] error 1
> cd amd/gact_ips && ./Run.ips.amd1 SPFP /home/ly/program/Amber12/include/netcdf.mod
> cudaMemcpyToSymbol: SetSim copy to cSim failed the launch timed out and was terminated
> ./Run.ips.amd1: Program error
> make[3]: [test.pmemd.cuda.pme] error 1
> cd amd/gact_ips && ./Run.ips.amd2 SPFP /home/ly/program/Amber12/include/netcdf.mod
> cudaMemcpyToSymbol: SetSim copy to cSim failed the launch timed out and was terminated
> ./Run.ips.amd2: Program error
> make[3]: [test.pmemd.cuda.pme] error 1
> cd amd/gact_ips && ./Run.ips.amd3 SPFP /home/ly/program/Amber12/include/netcdf.mod
> cudaMemcpyToSymbol: SetSim copy to cSim failed the launch timed out and was terminated
> ./Run.ips.amd3: Program error
> make[3]: [test.pmemd.cuda.pme] error 1
> cd nmropt/pme/angle/ && ./Run.nmropt_1angle_pbc SPFP /home/ly/program/Amber12/include/netcdf.mod
> cudaMemcpyToSymbol: SetSim copy to cSim failed the launch timed out and was terminated
> ./Run.nmropt_1angle_pbc: Program error
> make[3]: [test.pmemd.cuda.pme] error 1
> cd nmropt/pme/distance/ && ./Run.dist_pbc SPFP /home/ly/program/Amber12/include/netcdf.mod
> cudaMemcpyToSymbol: SetSim copy to cSim failed the launch timed out and was terminated
> ./Run.dist_pbc: Program error
> make[3]: [test.pmemd.cuda.pme] error 1
> cd nmropt/pme/nmropt_1_torsion/ && ./Run.nmropt_1_torsion SPFP /home/ly/program/Amber12/include/netcdf.mod
> cudaMemcpyToSymbol: SetSim copy to cSim failed the launch timed out and was terminated
> ./Run.nmropt_1_torsion: Program error
> make[3]: [test.pmemd.cuda.pme] error 1
> cd nmropt/pme/tautp/ && ./Run.nmropt_1tautp_pbc SPFP /home/ly/program/Amber12/include/netcdf.mod
> cudaMemcpyToSymbol: SetSim copy to cSim failed the launch timed out and was terminated
> ./Run.nmropt_1tautp_pbc: Program error
> make[3]: [test.pmemd.cuda.pme] error 1
> cd nmropt/pme/temp/ && ./Run.nmropt_1temp_pbc SPFP /home/ly/program/Amber12/include/netcdf.mod
> cudaMemcpyToSymbol: SetSim copy to cSim failed the launch timed out and was terminated
> ./Run.nmropt_1temp_pbc: Program error
> make[3]: [test.pmemd.cuda.pme] error 1
> ------------------------------------
> Running CUDA Explicit solvent tests.
> Precision Model = SPFP
> ------------------------------------
> cd tip4pew/ && ./Run.tip4pew_box_nvt SPFP /home/ly/program/Amber12/include/netcdf.mod
> cudaMemcpyToSymbol: SetSim copy to cSim failed the launch timed out and was terminated
> ./Run.tip4pew_box_nvt: Program error
> make[3]: [test.pmemd.cuda.pme.serial] error 1
> cd tip4pew/ && ./Run.tip4pew_box_npt SPFP /home/ly/program/Amber12/include/netcdf.mod
> cudaMemcpyToSymbol: SetSim copy to cSim failed the launch timed out and was terminated
> ./Run.tip4pew_box_npt: Program error
> make[3]: [test.pmemd.cuda.pme.serial] error 1
> cd tip4pew/ && ./Run.tip4pew_oct_nvt SPFP /home/ly/program/Amber12/include/netcdf.mod
> cudaMemcpyToSymbol: SetSim copy to cSim failed the launch timed out and was terminated
> ./Run.tip4pew_oct_nvt: Program error
> make[3]: [test.pmemd.cuda.pme.serial] error 1
> cd tip4pew/ && ./Run.tip4pew_oct_npt SPFP /home/ly/program/Amber12/include/netcdf.mod
> cudaMemcpyToSymbol: SetSim copy to cSim failed the launch timed out and was terminated
> ./Run.tip4pew_oct_npt: Program error
> make[3]: [test.pmem穗战不d.cuda.pme.serial] error 1
> cd tip5p/ && ./Run.tip5p_box_nvt SPFP /home/ly/program/Amber12/include/netcdf.mod
> cudaMemcpyToSymbol: SetSim copy to cSim failed the launch timed out and was terminated
> ./Run.tip5p_box_nvt: Program error
> make[3]: [test.pmemd.cuda.pme.serial] error 1
> cd tip5p/ && ./Run.tip5p_box_npt SPFP /home/ly/program/Amber12/include/netcdf.mod
> cudaMemcpyToSymbol: SetSim copy to cSim failed the launch timed out and was terminated
> ./Run.tip5p_box_npt: Program error
> make[3]: [test.pmemd.cuda.pme.serial] error 1
> cd tip5p/ && ./Run.tip5p_oct_nvt SPFP /home/ly/program/Amber12/include/netcdf.mod
> cudaMemcpyToSymbol: SetSim copy to cSim failed the launch timed out and was terminated
> ./Run.tip5p_oct_nvt: Program error
> make[3]: [test.pmemd.cuda.pme.serial] error 1
> cd tip5p/ && ./Run.tip5p_oct_npt SPFP /home/ly/program/Amber12/include/netcdf.mod
> cudaMemcpyToSymbol: SetSim copy to cSim failed the launch timed out and was terminated
> ./Run.tip5p_oct_npt: Program error
> make[3]: [test.pmemd.cuda.pme.serial] error 1
> cd dhfr/ && ./Run.dhfr.min SPFP /home/ly/program/Amber12/include/netcdf.mod
> cudaMemcpyToSymbol: SetSim copy to cSim failed the launch timed out and was terminated
> ./Run.dhfr.min: Program error
> make[3]: [test.pmemd.cuda.pme.serial] error 1
> cd chamber/dhfr_pbc/ && ./Run.dhfr_pbc_charmm_noshake.min SPFP /home/ly/program/Amber12/include/netcdf.mod
> cudaMemcpyToSymbol: SetSim copy to cSim failed the launch timed out and was terminated
> ./Run.dhfr_pbc_charmm_noshake.min: Program error
> make[3]: [test.pmemd.cuda.pme.serial] error 1
> cd chamber/dhfr_cmap_pbc/ && ./Run.dhfr_cmap_pbc_charmm.min SPFP /home/ly/program/Amber12/include/netcdf.mod
> cudaMemcpyToSymbol: SetSim copy to cSim failed the launch timed out and was terminated
> ./Run.dhfr_cmap_pbc_charmm.min: Program error
> make[3]: [test.pmemd.cuda.pme.serial] error 1
> cd chamber/dhfr_cmap_pbc/ && ./Run.dhfr_cmap_pbc_charmm_noshake.min SPFP /home/ly/program/Amber12/include/netcdf.mod
> cudaMemcpyToSymbol: SetSim copy to cSim failed the launch timed out and was terminated
> ./Run.dhfr_cmap_pbc_charmm_noshake.min: Program error
> make[3]: [test.pmemd.cuda.pme.serial] error 1
>
> 38 file comparisons passed
> 3 file comparisons failed
> 40 tests experienced errors
> could you tell me how can I solve the problems and whether such errors can ignore?
> _______________________________________________
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Received on Fri Sep 28 2012 - 09:00:04 PDT
