[AMBER] How to equilibrate only protons, and only side chain

From: Sindrila Dutta banik <sindrila.duttabanik.yahoo.com>
Date: Fri, 28 Sep 2012 20:54:32 +0800 (SGT)

Dear all,

I want to generate the trajectory for a protein system. I want to relax first solvent and then protons followed by side chain of amino acids. 

Is SHAKE can do this? Or there is any other option. 

Please let me know

Sindrila Dutta Banik
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Received on Fri Sep 28 2012 - 06:00:06 PDT