[AMBER] need help to generate parameter file for a small molecule which is covalently bound to the main chain of the protein

Contemporary messages sorted: [ by date ] [ by thread ] [ by subject ] [ by author ] [ by messages with attachments ]

From: ARP ARP <arpamber12.gmail.com>
Date: Wed, 19 Sep 2012 20:21:52 +0800

Hi all,
I am new in using Amber and this is my first post. I want to build the
parameter files (.prepi and .frcmod) for a modified Cysteine residue (side
chain is modified to a bulk aromatic group) in my protein, with
antechamber. Please help.
Please note that I am using amber 11. Thanks.
-A
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Wed Sep 19 2012 - 05:30:04 PDT