[AMBER] can DSSP program give more information

From: vaibhav dixit <vaibhavadixit.gmail.com>
Date: Mon, 17 Sep 2012 12:34:08 +0530

Dear Amber users,
I'm using secstruct command for making secondary structure prediction.
Manual says that it uses DSSP program. My question is...
Can DSSP program be used to print a list of pair of AA residue names/IDs
that form backbone H-bonds in a given protein sequence?
It does seem to calculate/use this information for giving the usual output
files.

Thanks for your help and suggestions in advance.

-- 
With regards
Vaibhav A. Dixit
Ph.D. Scholar
Department of Medicinal Chemistry
Natl. Inst. Pharm. Edu. & Res. (NIPER)
Sector 67, Phase X,  S.A.S. Nagar (Mohali)
Punjab -160 062 INDIA
Phone (Mobile): +919915214408
E-mail: vaibhavadixit.gmail.com
www.niper.nic.in
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Received on Mon Sep 17 2012 - 00:30:03 PDT