Re: [AMBER] Error in converstion of pdb to mol2

From: David A Case <case.biomaps.rutgers.edu>
Date: Fri, 14 Sep 2012 09:59:50 -0400

On Fri, Sep 14, 2012, Anogna wrote:
>
> The following is my ligand pdb file
>
> HETATM 8833 C1 COM A 1 19.831 16.769 69.471 1.00 0.00
> HETATM 8834 C2 COM A 1 20.941 17.638 69.469 1.00 0.00
> HETATM 8835 C3 COM A 1 19.620 15.877 68.404 1.00 0.00
> HETATM 8836 C4 COM A 1 21.863 17.622 68.383 1.00 0.00
> HETATM 8837 C5 COM A 1 20.523 15.850 67.326 1.00 0.00
> HETATM 8838 C6 COM A 1 21.633 16.717 67.318 1.00 0.00
> HETATM 8839 C7 COM A 1 23.070 18.532 68.329 1.00 0.00
> HETATM 8840 O8 COM A 1 24.030 18.214 67.593 1.00 0.00
> HETATM 8841 O9 COM A 1 21.089 18.480 70.534 1.00 0.00
> HETATM 8842 N10 COM A 1 20.326 15.002 66.307 1.00 0.00
> HETATM 8843 O17 COM A 1 23.087 19.579 69.016 1.00 0.00

You don't have any hydrogens! Those are required to use antechamber.

...dac


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Received on Fri Sep 14 2012 - 07:00:05 PDT
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