On Mon, Sep 10, 2012, jit mukherjee wrote:
>
> Can the normal mode vibration obtained from normal mode analysis be
> visualized? How to know the frequency of a particular vibration, e.g. ,
> bending vibration frequency of H-O-H angle in water?
You can follow the "IED" link at
http://ambermd.org. But I haven't used this
myself for a while and I think that it may not be compatible with the current
version of VMD. If so, report what you find, and maybe some python guru will
look into it.
...dac
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Received on Mon Sep 10 2012 - 06:30:02 PDT
