Re: [AMBER] Segmentation Fault in Tleap

From: Jason Swails <jason.swails.gmail.com>
Date: Thu, 30 Aug 2012 19:52:28 -0400

This is a known issue for 64-bit machines. It has been fixed a long time ago (amber 9 is going on 7 years old at this point).

Install the latest version of AmberTools and it should work.

HTH,
Jason

--
Jason M. Swails
Quantum Theory Project,
University of Florida
Ph.D. Candidate
352-392-4032
On Aug 30, 2012, at 5:19 PM, Deepak Ojha <alwaysinthemind.gmail.com> wrote:
> Dear All
> I installed the amber9 on my Ubuntu desktop successfully and made it
> pass serial test also.
> However when I tried to perform the tutorials on site,my leap command
> crashed with the following message:
> 
>    Welcome to LEaP!
> Sourcing: /home/deepak/Downloads/Software/amber9/dat/leap/cmd/leaprc.ff99SB
> Log file: ./leap.log
> Loading parameters:
> /home/deepak/Downloads/Software/amber9/dat/leap/parm/parm99.dat
> Reading title:
> PARM99 for DNA,RNA,AA, organic molecules, TIP3P wat. Polariz.& LP incl.02/04/99
> Loading parameters:
> /home/deepak/Downloads/Software/amber9/dat/leap/parm/frcmod.ff99SB
> Reading force field modification type file (frcmod)
> Reading title:
> Modification/update of parm99.dat (Hornak & Simmerling)
> Loading library:
> /home/deepak/Downloads/Software/amber9/dat/leap/lib/all_nucleic94.lib
> Segmentation fault
> 
> 
> 
> Please help me with the issue.
> with regards
> DeepaK Ojha
> School Of Chemistry
> 
> "Selfishness is not living as one wishes to live, it is asking others
> to live as one wishes to live"
> 
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Received on Thu Aug 30 2012 - 17:00:02 PDT
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