Re: [AMBER] Can we use Ambertools analysis MD from GROMACS

From: Jason Swails <>
Date: Mon, 27 Aug 2012 07:02:25 -0400

On Mon, Aug 27, 2012 at 4:52 AM, Acoot Brett <> wrote:

> Dear All,
> Can we use Ambertools 12 analyze the MD trajectory got by GROMACS? If can,
> how can we change the trajectory file format so theat it is recognizable by
> Ambertools?

You can probably use vmd to convert the gromacs-trajectory file into a
format that Amber can read (dcd, Amber netcdf, etc.) Natively, however, I
don't think that gromacs makes a trajectory format readable by Amber.


Jason M. Swails
Quantum Theory Project,
University of Florida
Ph.D. Candidate
AMBER mailing list
Received on Mon Aug 27 2012 - 04:30:04 PDT
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