On Mon, Aug 27, 2012 at 4:52 AM, Acoot Brett <acootbrett.yahoo.com> wrote:
> Dear All,
>
> Can we use Ambertools 12 analyze the MD trajectory got by GROMACS? If can,
> how can we change the trajectory file format so theat it is recognizable by
> Ambertools?
>
You can probably use vmd to convert the gromacs-trajectory file into a
format that Amber can read (dcd, Amber netcdf, etc.) Natively, however, I
don't think that gromacs makes a trajectory format readable by Amber.
HTH,
Jason
--
Jason M. Swails
Quantum Theory Project,
University of Florida
Ph.D. Candidate
352-392-4032
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Received on Mon Aug 27 2012 - 04:30:04 PDT
