Yes. As long as the residue you are trying to mutate to alanine is an amino acid residue on the protein it will not matter what the ligand is composed of.
-Bill
On Aug 21, 2012, at 5:31 AM, Mannan <malie_03.yahoo.co.in> wrote:
> Hi,
>
>
>
> I am using MMPBSA.py to do the alanine scan with protein-peptide complex, but Is it possible to do Alanine scan for a protein-ligand complex (ligand with chlorine atoms) trajectory
>
>
> Many Thanks in Advance,
>
> Mannan
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Received on Tue Aug 21 2012 - 04:30:05 PDT
