I am also having the same problem with the following command and input
file, I sincerely appreciate any suggestions.
$AMBERHOME/exe/sander -O -i calc_sasa.in -p ../prot.top -y input_traj -o
sasa.out -c one_of_the_restart_files
Find SASA
&general
imin=5,
keep_files=2,
verbose=2,
interval=10,
strip_mask=":Cl-:Na+:WAT",
&end
&gb
surften=1,
igb=5,
gbsa=2,
saltcon=0.2,
&end
Best,
Elif Nihal Korkmaz
Research Assistant
University of Wisconsin - Biophysics
Member of Qiang Cui & Thomas Record Labs
1101 University Ave, Rm. 8359
Madison, WI 53706
Phone: 608-265-3644
Email: korkmaz.wisc.edu
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Received on Sun Aug 19 2012 - 21:00:03 PDT
