[AMBER] Starting and ending temperatures for REMD

From: Sajeewa Pemasinghe <sajeewasp.gmail.com>
Date: Wed, 8 Aug 2012 13:26:56 -0400

Hi everyone,

Could someone please advise me or suggest a link where I can find a way to
decide the best starting and ending temperature for a given system to run
REMD (Replica Exchange Molecular Dynamics). The amber tutorial on remd
doesn't give any help in deciding the starting and ending temperatures. I
have been searching online in vain to find a method which gives the optimum
starting and ending temperatures.

I'm going to get my temperatures using
http://folding.bmc.uu.se/remd/index.php .But I need the starting and ending

Thank you

Sajeewa Dewage
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Received on Wed Aug 08 2012 - 10:30:03 PDT
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