Hi everyone,
Could someone please advise me or suggest a link where I can find a way to
decide the best starting and ending temperature for a given system to run
REMD (Replica Exchange Molecular Dynamics). The amber tutorial on remd
doesn't give any help in deciding the starting and ending temperatures. I
have been searching online in vain to find a method which gives the optimum
starting and ending temperatures.
I'm going to get my temperatures using
http://folding.bmc.uu.se/remd/index.php .But I need the starting and ending
temperature.
Thank you
Sajeewa Dewage
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Received on Wed Aug 08 2012 - 10:30:03 PDT
