Hi,
Although there is no limit on input line length in cpptraj, there is
currently a limit on the size of input masks since AT12 cpptraj still
uses the ptraj mask parser. The mask parser has been rewritten for the
next release of cpptraj and does not have this limitation. I will try
to work on a fix for the AT12 version in the meantime. Thanks for the
report!
-Dan
On Wed, Jul 25, 2012 at 4:57 AM, Jio M <jiomm.yahoo.com> wrote:
> Dear Daniel Roe,
>
>>>FYI, there is no maximum line length in cpptraj.
>
>
> Sorry I tested it late.
> I was trying to remove those large number of residues as a test. I am getting "segmentation fault" with these number of residues. So, I think, cpptraj has some limit also?, but unlike ptraj, in cpptraj strip command at least can read all residues once but in ACTIONS it mess up with the residue numbers (as seen in attached out file)
>
>
> in/out files are attached. So I was just thinking is it possible to read all residue numbers in some single array.
>
>
> regards,
>
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
--
-------------------------
Daniel R. Roe, PhD
Lab Specialist
Department of Medicinal Chemistry
University of Utah
30 South 2000 East, Room 201
Salt Lake City, UT 84112-5820
http://home.chpc.utah.edu/~cheatham/
(801) 587-9652
(801) 585-9119 (Fax)
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Thu Jul 26 2012 - 07:30:02 PDT
