Hi
I have restarted which gives me new error
make clean
I load the libraries used
module load gcc-openmpi
./configure -mpi gfortran
and I change the gfortran variable to mpif90 and I include the path to
the mpif.h in the config_amber.h file.
the version of mpif90 is mpif90 -v
Using built-in specs.
Target: x86_64-redhat-linux
Configured with: ../configure --prefix=/usr --mandir=/usr/share/man
--infodir=/usr/share/info --enable-shared --enable-threads=posix
--enable-checking=release --with-system-zlib --enable-__cxa_atexit
--disable-libunwind-exceptions --enable-libgcj-multifile
--enable-languages=c,c++,objc,obj-c++,java,fortran,ada
--enable-java-awt=gtk --disable-dssi --disable-plugin
--with-java-home=/usr/lib/jvm/java-1.4.2-gcj-1.4.2.0/jre
--with-cpu=generic --host=x86_64-redhat-linux
Thread model: posix
gcc version 4.1.2 20080704 (Red Hat 4.1.2-52)
and now I get the following error
cd ../netcdf/src; make install
make[2]: Entering directory `/home/pgreisen/amber10/src/netcdf/src'
Making install in f90
make[3]: Entering directory `/home/pgreisen/amber10/src/netcdf/src/f90'
/bin/sh ../libtool --mode=compile gfortran -I../libsrc -I. -g -O2 -c
-o typeSizes.lo typeSizes.f90
libtool: compile: unable to infer tagged configuration
libtool: compile: specify a tag with `--tag'
make[3]: *** [typeSizes.lo] Error 1
make[3]: Leaving directory `/home/pgreisen/amber10/src/netcdf/src/f90'
make[2]: *** [install-recursive] Error 1
make[2]: Leaving directory `/home/pgreisen/amber10/src/netcdf/src'
make[1]: *** [netcdf.mod] Error 2
make[1]: Leaving directory `/home/pgreisen/amber10/src/sander'
make: *** [parallel] Error 2
On Wed, Jul 25, 2012 at 9:30 AM, Daniel Roe <daniel.r.roe.gmail.com> wrote:
> Hi,
>
> What compilers (type/version) are you using, and what was your exact
> input to configure?
>
> On Wed, Jul 25, 2012 at 10:18 AM, Jorgen Simonsen <jorgen589.gmail.com> wrote:
>> /usr/bin/ld: cannot find -lnuma
>
> I don't think this is an Amber issue - it sounds like a problem with
> your MPI compilers. Either the NUMA library is not installed or it's
> not in your LD_LIBRARY_PATH. Check your package manager for libnuma.
>
> -Dan
>
>> collect2: ld returned 1 exit status
>> make[1]: *** [sander.MPI] Error 1
>>
>> Thanks
>>
>> _______________________________________________
>> AMBER mailing list
>> AMBER.ambermd.org
>> http://lists.ambermd.org/mailman/listinfo/amber
>
>
>
> --
> -------------------------
> Daniel R. Roe, PhD
> Lab Specialist
> Department of Medicinal Chemistry
> University of Utah
> 30 South 2000 East, Room 201
> Salt Lake City, UT 84112-5820
> http://home.chpc.utah.edu/~cheatham/
> (801) 587-9652
> (801) 585-9119 (Fax)
>
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Wed Jul 25 2012 - 10:30:03 PDT
