Re: [AMBER] How to Calculate SASA with Amber?

From: Daniel Roe <daniel.r.roe.gmail.com>
Date: Tue, 24 Jul 2012 16:46:47 -0600

Hi,

On Tue, Jul 24, 2012 at 2:40 PM, Shafinaz Chowdhury
<Shafinaz.Chowdhury.bri.nrc.ca> wrote:
> Comand line I used is
>
> sander -O -i SASA1.in -p 2am9_mb_ini.prmtop -c 2am9_mdwild.trj -o SASA1.out

The input trajectory should be specified by '-y'. You will need to
provide starting coordinates (i.e. a restart file) to '-c'.

-Dan

>
> I got an error message
>
>
> At line 225 of file _getcor.f
> Fortran runtime error: Bad value during integer read
> Could you please help me in this regard.
>
> I really apprecaite your help.
>
> Regards.
>
> Shafinaz Chowdhury,PhD
> Computational chemist
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-- 
-------------------------
Daniel R. Roe, PhD
Lab Specialist
Department of Medicinal Chemistry
University of Utah
30 South 2000 East, Room 201
Salt Lake City, UT 84112-5820
http://home.chpc.utah.edu/~cheatham/
(801) 587-9652
(801) 585-9119 (Fax)
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Received on Tue Jul 24 2012 - 16:00:02 PDT
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