Hi,
In case you feel like giving it one more try, you could try the rebaseall
command. I have found that sometimes cygwin can have dll issues after
updates, and that this can correct them.
http://cygwin.wikia.com/wiki/Rebaseall
-Dan
On Thursday, July 19, 2012, 钟舜 wrote:
> Dear Jason,
> It still doesn't work after adding "-nomtkpp" flag. And I
> decide to give the installation in Cygwin up.
> Thank you for your
> 2012/7/19 Jason Swails <jason.swails.gmail.com>
>
> > When you run configure, use the "-nomtkpp" flag. MTK++ has had plenty of
> > issues in the past with Cygwin. If you don't need MTK++, then this does
> > not matter. If you do, perhaps Dan can provide advice about getting it
> > working on Win7 if he was able to, but a better idea would be to get
> ahold
> > of some kind of Unix system somehow.
> >
> > HTH,
> > Jason
> >
> > On Thu, Jul 19, 2012 at 3:36 AM, 钟舜 <zhongshun0643.gmail.com> wrote:
> >
> >> Dear Jason,
> >> It is some patches of "netcdf" "hdf5" and "_autorebase". But
> >> I'm sorry to forget the exact name of these small patches. I didn't
> >> remember to write their name down when reinstallation.
> >> But I still get a warning after I typed "make install" and
> the
> >> installation failed at last.
> >>
> >> 警告： (1)处的 DO 循环会被执行零次
> >> netcdf_text_variables.f90:60.93:
> >> 包含于 netcdf.f90:51：
> >> numDims ) = (/ 1, (product(localCount(:counter)), counter = 1, numDims
> -
> >> 1) /)
> >>
> >> 1
> >> 警告： (1)处的 DO 循环会被执行零次
> >> /bin/sh ../libtool --mode=link gfortran -I../libsrc -I. -O3 -o
> >> libnetcdff90.la typeSizes.lo netcdf.lo
> >> See any operating system documentation about shared libraries for
> >> more information, such as the ld(1) and ld.so(8) manual pages.
> >> ----------------------------------------------------------------------
> >> test -z "/home/administrator/amber12/lib/pkgconfig" || /usr/bin/mkdir -p
> >> "/home/administrator/amber12/lib/pkgconfig"
> >> /usr/bin/install -c -m 644 fftw3.pc
> >> '/home/administrator/amber12/lib/pkgconfig'
> >> make[4]: 离开目录“/home/administrator/amber12/AmberTools/src/fftw-3.3”
> >> make[3]: 离开目录“/home/administrator/amber12/AmberTools/src/fftw-3.3”
> >> Making install in tests
> >> make[3]: 进入目录“/home/administrator/amber12/AmberTools/src/fftw-3.3/tests”
> >> make[4]: 进入目录“/home/administrator/amber12/AmberTools/src/fftw-3.3/tests”
> >> make[4]: 对“install-exec-am”无需做任何事。
> >> make[4]: 对“install-data-am”无需做任何事。
> >>
> >> ~
> >> ~
> >> ~
> >> ~
> >>
> >> Starting installation of MTK++ at 2012年07月19日 15:20:52.
> >> (cd mtkpp && make && make -j 1 install )
> >> make[2]: 进入目录“/home/administrator/amber12/AmberTools/src/mtkpp”
> >> make[2]: *** 没有指明目标并且找不到 makefile。 停止。
> >> make[2]: 离开目录“/home/administrator/amber12/AmberTools/src/mtkpp”
> >> Makefile:106: recipe for target `install_mtkpp' failed
> >> make[1]: *** [install_mtkpp] Error 2
> >> make[1]: 离开目录“/home/administrator/amber12/AmberTools/src”
> >> Makefile:7: recipe for target `install' failed
> >> make: *** [install] Error 2
> >>
> >> I really don't know what should I do now.
> >>
> >> Shun Zhong
> >>
> >> 2012/7/19 Jason Swails
> >>>
> >>> <jason.swails.gmail.com>
> >>
> >>
> >>
> >>> This is OK. I think this has to do with line endings (DOS and Unix do
> >>> theirs differently). IMO, you can safely ignore this failure. Just
> re-run
> >>> patch_amber.py with the --ignore-fails flag. i.e.:
> >>>
> >>>
> >>> cd $AMBERHOME
> >>> ./patch_amber.py --update-tree --ignore-fails
> >>>
> >>>
> >>> Then you should be good to run configure and build Amber.
> >>>
> >>>
> >>> Out of curiosity, which packages had you forgotten?
> >>>
> >>>
> >>> All the best,
> >>> Jason
> >>>
> >>> On Wed, Jul 18, 2012 at 10:38 PM, 钟舜 <zhongshun0643.gmail.com> wrote:
> >>>
> >>>
>
--
-------------------------
Daniel R. Roe, PhD
Lab Specialist
Department of Medicinal Chemistry
University of Utah
30 South 2000 East, Room 201
Salt Lake City, UT 84112-5820
http://home.chpc.utah.edu/~cheatham/
(801) 587-9652
(801) 585-9119 (Fax)
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Received on Thu Jul 19 2012 - 18:00:04 PDT
