On Wed, Jul 18, 2012, Foertter, Fernanda S. wrote:
>
> I'm trying to help a user compile Amber12 on Jaguar here at ORNL and I
> keep getting stuck at a nab2c test.
>
> I get the errors below:
>
> ~/codes/amber12/AmberTools/src/nab> ../../bin/mpinab2c -c -v dna3.nab
> nab2c: Internal error: nfname required
We need more context: the above command is not supposed to work, and you would
need a "-nfname" flag, as the error message indicates. So the question is:
how was the command created? Is it a part of the "make" process? What was
happening before this?
[One oddity is that, as far as I can see, Amber12 Makefiles never refer to
"../../bin" anymore, but but use the full path to $AMBERHOME instead. So I'm
looking for more information about what commands you typed, and maybe the full
log the make process.]
>
> amber12/bin/mpinab -v -c allatom_to_dna3.nab
> Illegal instruction
>
> my flags are: ./configure -crayxt5 -nomtkpp -static -noX11 -mpi gnu
This looks harder. Can you try removing the -crayxt5 and -static flags?
....dac
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Received on Wed Jul 18 2012 - 10:30:02 PDT
