It appears that you already patched these files (master_setup.F90,
pmemd.F90, and runfiles.F90) yourself before patch_amber.py tried to apply
bugfix.7.
You can make patch_amber.py ignore these failures if you're confident that
they're OK by using the flag "--ignore-fails", so your command will look
like:
./patch_amber.py --update-tree --ignore-fails
Make sure the tests pass afterwards, though.
HTH,
Jason
On Mon, Jul 16, 2012 at 4:31 AM, huseyin istanbullu
<istanbulluh.gmail.com>wrote:
> hi
> i can't install amber on my computer,
>
> ./patch_amber.py --update-tree
> Determining patches to download for AmberTools12
> AmberTools12 is up to date. Nothing to download
>
> Determining patches to download for Amber12
> Downloading bugfix.7
>
> Applying AmberTools12 patches
> Applying Amber12 patches
> Error or warning during patching process for
> .patches/Amber_Unapplied_Patches/bugfix.7:
> Reversed (or previously applied) patch detected! Skipping patch.
> 1 out of 1 hunk ignored -- saving rejects to file
> src/pmemd/src/master_setup.F90.rej
> Reversed (or previously applied) patch detected! Skipping patch.
> 4 out of 4 hunks ignored -- saving rejects to file
> src/pmemd/src/pmemd.F90.rej
> 2 out of 2 hunks FAILED -- saving rejects to file
> src/pmemd/src/runfiles.F90.rej
>
> thanks
>
> --
> verba volant, scripta manent
>
> http://serrahuseyin.blogspot.com
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
--
Jason M. Swails
Quantum Theory Project,
University of Florida
Ph.D. Candidate
352-392-4032
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Mon Jul 16 2012 - 05:00:02 PDT
