You need to change the ownership of that directory to your user name,
otherwise you won't have permission to create new files (and modify
existing ones). So run the command:
sudo chown -R `whoami` /mdlprogs/amber12
Then try again. In the future, you should keep these threads on the Amber
mailing list.
HTH,
Jason
On Thu, Jul 12, 2012 at 7:06 AM, huseyin istanbullu
<istanbulluh.gmail.com>wrote:
> hi Jason,
> thank you for your kindly reply;
> i try to install Amber12 on Ubuntu 12.04 LTS, 64-bit
> after this command
>
> *./patch_amber.py --ignore-fails --update*
>
> and than
>
> * ./configure gnu*
>
> message is
>
> *Creating file
> /mdlprg/amber12/test/qmmm_EXTERN/QMMM_MD_Orca/Run.aladip.hf_sto-3g.MechEm
> Traceback (most recent call last):
> File "./patch_amber.py", line 933, in <module>
> check = _files_present(ipatch)
> File "./patch_amber.py", line 545, in _files_present
> tmpfile = open(path.join(getenv('AMBERHOME'), fname), 'w')
> IOError: [Errno 13] Permission denied:
> '/mdlprg/amber12/test/qmmm_EXTERN/QMMM_MD_Orca/Run.aladip.hf_sto-3g.MechEm'
> Automatic patching failed! Check the errors before re-configuring*
>
>
>
> AmberTools12 is up to date
> Amber12 has 4 unapplied patches: 4, 5, 6, 7
>
>
> i'm new on Linux,
>
> thank you very much
>
> huseyin istanbullu
>
>
> --
> verba volant, scripta manent
>
> http://serrahuseyin.blogspot.com
>
--
Jason M. Swails
Quantum Theory Project,
University of Florida
Ph.D. Candidate
352-392-4032
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Received on Thu Jul 12 2012 - 05:30:03 PDT
