[AMBER] MMPBSA.py decomposition option

From: Damodaran, Komath <Komath.Damodaran.elan.com>
Date: Tue, 10 Jul 2012 09:06:31 -0700

Hi,

The decomposition option 4 (i.e, pair-wise decomposition with 1-4 contributions added to the respective nonbond terms) with PB solvent, is inordinately slow, vis-à-vis the residue-wise decomposition. Is there any documentation on how exactly these decompositions are done and explaining this behavior?

 

Thanks very much!

Dam

 


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Received on Tue Jul 10 2012 - 09:30:03 PDT
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