Re: [AMBER] force field library for protonated cytosine

From: David A Case <case.biomaps.rutgers.edu>
Date: Thu, 28 Jun 2012 13:50:04 -0400

On Thu, Jun 28, 2012, Jio M wrote:

> May be its solved but just wondering this,
>
> > RESIDUE name: PC
>
> >You originally used c.24.N24
> shouldn't it be this:
> bond PC.1.N24 PC.1.H25 instead of >> bond c.1.N24 c.1.H25

No: the first entry (before the ".") is the *unit* name, not the residue name.

As I mentioned before, you can use the "list" and "desc" commands to find
the names LEaP has assigned to things.

....dac


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Received on Thu Jun 28 2012 - 11:00:02 PDT
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