On 06/22/2012 12:05 AM, J B wrote:
> I am a Gromacs user and I have tried these parameters that are supposed to be compatible with the AMBER force fields:
> http://web.me.com/jambeck/lipids/Downloads.html
> And they work well for saturated PC lipids without applying a surface tension and apparently parameters for unsaturated lipids are on the way.
> Used a real space cut off of 10 angstrom and a LJ cut off of 12 Angstrom and got good results compared to experiments.
> I guess that these parameters are easy to use in AMBER...
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Hi J.B:
that's wonderful work.
I am just wondering, is it possible use it in Amber? Can you provide
some scripts or the like so that Amber can also use them? Probably, most
people are looking forward to POPC/POPE lipids which are the most widely
used for membrane protein simulations.
best
Albert
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Received on Thu Jun 21 2012 - 23:00:02 PDT
