Hello all,
I understand that RESP charges in amber ff were derived using only B-form
(C2'-endo) for DNA residues and A-form (C3'-endo) for RNA residues.
So I wonder if it would be problematic to use such charge parameters for
the simulation of single nucletides or short oligonucleotides?
Thanks,
Yun
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Received on Mon Jun 18 2012 - 22:30:03 PDT
