Re: [AMBER] Facing problem on TUTORIAL A1

From: sudipta <sudipta.mml.gmail.com>
Date: Fri, 15 Jun 2012 12:05:30 -0700

Hi Thomas,

I have checked the name of CU atoms in .pdb and .frcmod files. The name of
CU atom in both files are same. The files are attached here. Please have a
look on those if there is any wrong. By the way, I use AMBER9.

regards
Sudipta


On Fri, Jun 15, 2012 at 12:10 AM, <steinbrt.rci.rutgers.edu> wrote:

> Hi,
>
> >> saveamberparm 1PLC 1PLC.prmtop 1PLC.inpcrd
> > Checking Unit.
> > FATAL: Atom .R<CUA 100>.A<CU 1> does not have a type.
> > Failed to generate parameters
> > Parameter file was not saved.
>
> This is most likely a naming issue. Check that the parameter file you made
> for copper is loaded and that it has the same residue and atom name as in
> the pdb you want to load.
>
> Kind Regards,
>
> Thomas
>
> Dr. Thomas Steinbrecher
> formerly at the
> BioMaps Institute
> Rutgers University
> 610 Taylor Rd.
> Piscataway, NJ 08854
>
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>


_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber

Received on Fri Jun 15 2012 - 12:30:03 PDT
Custom Search