Ok, attached is the build.log
And here's what I see on my terminal:
Thanks,
Adam
ps. Here's what I see on my terminal:
adam.adam-MS-7750:~/amber12$ make install 2>&1 > build.log
vardata.c: In function ‘pr_bvals’:
vardata.c:491: warning: format not a string literal and no format arguments
vardata.c:501: warning: format not a string literal and no format arguments
vardata.c: In function ‘pr_svals’:
vardata.c:539: warning: format not a string literal and no format arguments
vardata.c:549: warning: format not a string literal and no format arguments
vardata.c: In function ‘pr_ivals’:
vardata.c:589: warning: format not a string literal and no format arguments
vardata.c:599: warning: format not a string literal and no format arguments
vardata.c: In function ‘pr_fvals’:
vardata.c:637: warning: format not a string literal and no format arguments
vardata.c:647: warning: format not a string literal and no format arguments
vardata.c: In function ‘pr_dvals’:
vardata.c:685: warning: format not a string literal and no format arguments
vardata.c:695: warning: format not a string literal and no format arguments
This is not dpkg install-info anymore, but GNU install-info
See the man page for ginstall-info for command line arguments
rm: cannot remove `.libs/libDiagnostics.a': Permission denied
rm: cannot remove `.libs/libDiagnostics.la': Permission denied
rm: cannot remove `.libs/libDiagnostics.lai': Permission denied
ar: could not create temporary file whilst writing archive: No more archived files
make[5]: *** [libDiagnostics.la] Error 1
make[4]: *** [all-recursive] Error 1
make[3]: *** [all-recursive] Error 1
make[2]: *** [all] Error 2
make[1]: *** [install_mtkpp] Error 2
make: *** [install] Error 2
adam.adam-MS-7750:~/amber12$
________________________________
From: Jason Swails <jason.swails.gmail.com>
To: Adam Jion <adamjion.yahoo.com>
Cc: AMBER Mailing List <amber.ambermd.org>
Sent: Friday, June 8, 2012 9:31 AM
Subject: Re: [AMBER] Problems installing AmberTools12 on Ubuntu
It would help to see the entire build log, since I can't tell what happened beforehand. Try running it like this:
cd $AMBERHOME
make clean uninstall
./configure gnu
make install 2>&1 > build.log
Then, attach the build.log.
Thanks!
Jason
On Thu, Jun 7, 2012 at 9:22 PM, Adam Jion <adamjion.yahoo.com> wrote:
Hi Jason,
>
>
>Yes, I have Python in the directories:
>/usr/local/bin/python2.7
>and
>/usr/bin/python
>
>
>I configured without problem using:
>./configure --with-python /usr/bin/python gnu
>
>
>But when I ran:
>make install
>I got the following error message:
>./py_setup.sh /home/adam/amber12/bin /usr/bin/python
>
>Error importing cpinutil.py python modules! cpinutil will not work.
>make[2]: *** [python] Error 1
>make[2]: Leaving directory `/home/adam/amber12/AmberTools/src/etc'
>make[1]: *** [serial] Error 2
>make[1]: Leaving directory `/home/adam/amber12/AmberTools/src'
>make: *** [install] Error
2
>
>
>Regards,
>Adam
>
>
>
>________________________________
> From: Jason Swails <jason.swails.gmail.com>
>To: Adam Jion <adamjion.yahoo.com>; AMBER Mailing List <amber.ambermd.org>
>Sent: Thursday, June 7, 2012 10:40 PM
>Subject: Re: [AMBER] Problems installing AmberTools12 on Ubuntu
>
>
>Is there a /usr/local/bin/python2.7?
>
>Is there a /usr/bin/python?
>
>If so, then use the configure command:
>
>./configure --with-python /usr/bin/python gnu
>
>HTH,
>Jason
>
>On Thu, Jun 7, 2012 at 4:47 AM, Adam Jion <adamjion.yahoo.com> wrote:
>
>> Hi,
>>
>> I'm having problems installing AmberTools12 on my Ubuntu machine.
>> Most likely is due to an incorrect path to Python.
>> Can anyone tell me which version of Python I should use, and into which
>> the directory I should install Python for AmberTools12 to work out of the
>> box?
>>
>> Regards,
>> Adam
>>
>> ps. The error log is given below:
>> ./py_setup.sh /home/adam/amber12/bin /usr/local/bin/python2.7
>> Error importing cpinutil.py python modules! cpinutil will not work.
>> make[2]: *** [python] Error 1
>> make[2]: Leaving directory `/home/adam/amber12/AmberTools/src/etc'
>> make[1]: *** [serial] Error 2
>> make[1]: Leaving directory `/home/adam/amber12/AmberTools/src'
>> make: *** [install] Error 2
>> _______________________________________________
>> AMBER mailing list
>> AMBER.ambermd.org
>> http://lists.ambermd.org/mailman/listinfo/amber
>>
>
>
>
>--
>Jason M. Swails
>Quantum Theory Project,
>University of Florida
>Ph.D. Candidate
>352-392-4032
>_______________________________________________
>AMBER mailing list
>AMBER.ambermd.org
>http://lists.ambermd.org/mailman/listinfo/amber
>
>
>
--
Jason M. Swails
Quantum Theory Project,
University of Florida
Ph.D. Candidate
352-392-4032
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Thu Jun 07 2012 - 19:00:04 PDT
